Protein–RNA interactions for Protein: Q5T3J3

LRIF1, Ligand-dependent nuclear receptor-interacting factor 1, humanhuman

Predictions only

Length 769 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1Q5T3J3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 AC105265.2-201ENST00000467189 838 ntBASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LRIF1Q5T3J3 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LRIF1Q5T3J3 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 AC007322.3-201ENST00000426526 701 ntBASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 AC123595.1-201ENST00000440769 1046 ntBASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 TERF1P2-201ENST00000583350 1212 ntBASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LRIF1Q5T3J3 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 DPP3P2-201ENST00000416030 1696 ntBASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LRIF1Q5T3J3 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
LRIF1Q5T3J3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 BX119927.1-201ENST00000636596 1552 ntBASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 AC005837.3-201ENST00000612163 286 ntBASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.11■□□□□ 0.65
LRIF1Q5T3J3 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms