Protein–RNA interactions for Protein: P62312

LSM6, U6 snRNA-associated Sm-like protein LSm6, humanhuman

Known RBP Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6P62312 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC17.86■□□□□ 0.45
LSM6P62312 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
LSM6P62312 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.85■□□□□ 0.45
LSM6P62312 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM6P62312 METTL26-203ENST00000397664 604 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM6P62312 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
LSM6P62312 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.85■□□□□ 0.45
LSM6P62312 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC17.85■□□□□ 0.45
LSM6P62312 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM6P62312 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.85■□□□□ 0.45
LSM6P62312 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.85■□□□□ 0.45
LSM6P62312 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
LSM6P62312 MDK-213ENST00000617138 635 ntTSL 2 BASIC17.85■□□□□ 0.45
LSM6P62312 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC17.85■□□□□ 0.45
LSM6P62312 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.84■□□□□ 0.45
LSM6P62312 AC022517.1-201ENST00000592429 346 ntBASIC17.84■□□□□ 0.45
LSM6P62312 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 PARP1-210ENST00000629232 477 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
LSM6P62312 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.84■□□□□ 0.45
LSM6P62312 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.84■□□□□ 0.45
LSM6P62312 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.83■□□□□ 0.45
LSM6P62312 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LSM6P62312 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
LSM6P62312 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM6P62312 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
LSM6P62312 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
LSM6P62312 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
LSM6P62312 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC17.83■□□□□ 0.45
LSM6P62312 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 MCRIP2P1-201ENST00000394346 511 ntBASIC17.83■□□□□ 0.44
LSM6P62312 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC17.83■□□□□ 0.44
LSM6P62312 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.83■□□□□ 0.44
LSM6P62312 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.83■□□□□ 0.44
LSM6P62312 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
LSM6P62312 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC17.83■□□□□ 0.44
LSM6P62312 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
LSM6P62312 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
LSM6P62312 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC17.82■□□□□ 0.44
LSM6P62312 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.82■□□□□ 0.44
LSM6P62312 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.82■□□□□ 0.44
LSM6P62312 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
LSM6P62312 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.82■□□□□ 0.44
LSM6P62312 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 AC007322.1-201ENST00000426983 750 ntBASIC17.82■□□□□ 0.44
LSM6P62312 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
LSM6P62312 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC17.82■□□□□ 0.44
LSM6P62312 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC17.82■□□□□ 0.44
LSM6P62312 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC17.82■□□□□ 0.44
LSM6P62312 AC069236.1-201ENST00000604339 616 ntBASIC17.82■□□□□ 0.44
LSM6P62312 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.82■□□□□ 0.44
LSM6P62312 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
LSM6P62312 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms