Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CIITAP33076 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CIITAP33076 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CIITAP33076 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
CIITAP33076 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CIITAP33076 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC22.93■■□□□ 1.26
CIITAP33076 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.93■■□□□ 1.26
CIITAP33076 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC22.93■■□□□ 1.26
CIITAP33076 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
CIITAP33076 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 RNA5SP413-201ENST00000516373 109 ntBASIC22.93■■□□□ 1.26
CIITAP33076 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC22.93■■□□□ 1.26
CIITAP33076 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC22.93■■□□□ 1.26
CIITAP33076 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.93■■□□□ 1.26
CIITAP33076 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CIITAP33076 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC22.93■■□□□ 1.26
CIITAP33076 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC22.93■■□□□ 1.26
CIITAP33076 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC22.92■■□□□ 1.26
CIITAP33076 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC22.92■■□□□ 1.26
CIITAP33076 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 UNC93B5-201ENST00000530315 699 ntBASIC22.92■■□□□ 1.26
CIITAP33076 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC22.92■■□□□ 1.26
CIITAP33076 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC22.92■■□□□ 1.26
CIITAP33076 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.92■■□□□ 1.26
CIITAP33076 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC22.92■■□□□ 1.26
CIITAP33076 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC22.92■■□□□ 1.26
CIITAP33076 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
CIITAP33076 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CIITAP33076 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 PNMA6B-201ENST00000538162 1200 ntBASIC22.91■■□□□ 1.26
CIITAP33076 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC22.91■■□□□ 1.26
CIITAP33076 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC22.91■■□□□ 1.26
CIITAP33076 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.91■■□□□ 1.26
CIITAP33076 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC22.91■■□□□ 1.26
CIITAP33076 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC22.9■■□□□ 1.26
CIITAP33076 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 PTBP1P-201ENST00000554374 1601 ntBASIC22.9■■□□□ 1.26
CIITAP33076 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC22.9■■□□□ 1.26
CIITAP33076 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 GAS7-202ENST00000396115 929 ntTSL 5 BASIC22.9■■□□□ 1.26
CIITAP33076 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC22.9■■□□□ 1.26
CIITAP33076 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC22.9■■□□□ 1.26
CIITAP33076 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC22.9■■□□□ 1.26
CIITAP33076 SLC29A4P2-201ENST00000504749 1089 ntBASIC22.9■■□□□ 1.26
CIITAP33076 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 MIR4651-201ENST00000582622 73 ntBASIC22.9■■□□□ 1.26
CIITAP33076 MOK-233ENST00000524214 1539 ntTSL 2 BASIC22.9■■□□□ 1.26
CIITAP33076 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC22.9■■□□□ 1.26
CIITAP33076 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC22.9■■□□□ 1.26
CIITAP33076 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CIITAP33076 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
CIITAP33076 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC22.89■■□□□ 1.26
CIITAP33076 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CIITAP33076 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CIITAP33076 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC22.89■■□□□ 1.26
CIITAP33076 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.89■■□□□ 1.25
CIITAP33076 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC22.89■■□□□ 1.25
CIITAP33076 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.89■■□□□ 1.25
CIITAP33076 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC22.89■■□□□ 1.25
CIITAP33076 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC22.89■■□□□ 1.25
CIITAP33076 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.25
CIITAP33076 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
CIITAP33076 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC22.89■■□□□ 1.25
CIITAP33076 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
CIITAP33076 AC092368.3-202ENST00000574180 1591 ntBASIC22.89■■□□□ 1.25
CIITAP33076 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC22.88■■□□□ 1.25
CIITAP33076 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC22.88■■□□□ 1.25
CIITAP33076 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
CIITAP33076 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC22.88■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms