Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HLA-DMBP28068 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HLA-DMBP28068 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
HLA-DMBP28068 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
HLA-DMBP28068 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
HLA-DMBP28068 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 ADM-207ENST00000530439 1839 ntTSL 2 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC15.45■□□□□ 0.06
HLA-DMBP28068 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 PTPA-214ENST00000423100 988 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
HLA-DMBP28068 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC15.44■□□□□ 0.06
HLA-DMBP28068 SMG8-203ENST00000578922 2178 ntBASIC15.43■□□□□ 0.06
HLA-DMBP28068 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 AL137784.2-201ENST00000607332 1000 ntBASIC15.43■□□□□ 0.06
HLA-DMBP28068 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 AC116050.2-201ENST00000612102 1779 ntBASIC15.43■□□□□ 0.06
HLA-DMBP28068 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
HLA-DMBP28068 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC15.43■□□□□ 0.06
HLA-DMBP28068 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 COX20-201ENST00000366528 568 ntTSL 2 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 TESC-206ENST00000541210 936 ntTSL 3 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 IKBKGP1-201ENST00000612193 1073 ntBASIC15.42■□□□□ 0.06
HLA-DMBP28068 MIR2861-201ENST00000636310 90 ntBASIC15.42■□□□□ 0.06
HLA-DMBP28068 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 AC004854.2-201ENST00000608450 1441 ntBASIC15.42■□□□□ 0.06
HLA-DMBP28068 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
HLA-DMBP28068 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC15.42■□□□□ 0.06
HLA-DMBP28068 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HLA-DMBP28068 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC15.41■□□□□ 0.06
HLA-DMBP28068 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms