Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
COL5A1P20908 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL5A1P20908 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
COL5A1P20908 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.67■□□□□ 0.74
COL5A1P20908 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.67■□□□□ 0.74
COL5A1P20908 CD177P1-201ENST00000606252 935 ntBASIC19.67■□□□□ 0.74
COL5A1P20908 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
COL5A1P20908 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.67■□□□□ 0.74
COL5A1P20908 EP400NL-214ENST00000641289 2402 ntBASIC19.67■□□□□ 0.74
COL5A1P20908 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL5A1P20908 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.67■□□□□ 0.74
COL5A1P20908 KRT16P5-201ENST00000455284 522 ntBASIC19.67■□□□□ 0.74
COL5A1P20908 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.66■□□□□ 0.74
COL5A1P20908 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL5A1P20908 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.66■□□□□ 0.74
COL5A1P20908 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.66■□□□□ 0.74
COL5A1P20908 AC026471.5-201ENST00000615068 467 ntBASIC19.66■□□□□ 0.74
COL5A1P20908 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.66■□□□□ 0.74
COL5A1P20908 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL5A1P20908 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A1P20908 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL5A1P20908 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.65■□□□□ 0.74
COL5A1P20908 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A1P20908 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A1P20908 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL5A1P20908 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.65■□□□□ 0.74
COL5A1P20908 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.65■□□□□ 0.74
COL5A1P20908 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 AL121906.2-201ENST00000621597 723 ntBASIC19.65■□□□□ 0.74
COL5A1P20908 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.65■□□□□ 0.74
COL5A1P20908 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.65■□□□□ 0.74
COL5A1P20908 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC19.65■□□□□ 0.74
COL5A1P20908 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC19.65■□□□□ 0.74
COL5A1P20908 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.65■□□□□ 0.74
COL5A1P20908 AP003071.4-201ENST00000562276 1284 ntBASIC19.65■□□□□ 0.74
COL5A1P20908 AL445228.2-201ENST00000605589 952 ntBASIC19.65■□□□□ 0.74
COL5A1P20908 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL5A1P20908 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
COL5A1P20908 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
COL5A1P20908 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
COL5A1P20908 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A1P20908 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC19.64■□□□□ 0.73
COL5A1P20908 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
COL5A1P20908 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.64■□□□□ 0.73
COL5A1P20908 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
COL5A1P20908 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.63■□□□□ 0.73
COL5A1P20908 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.63■□□□□ 0.73
COL5A1P20908 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.63■□□□□ 0.73
COL5A1P20908 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
COL5A1P20908 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
COL5A1P20908 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.63■□□□□ 0.73
COL5A1P20908 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
COL5A1P20908 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.63■□□□□ 0.73
COL5A1P20908 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A1P20908 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A1P20908 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.62■□□□□ 0.73
COL5A1P20908 AF186192.3-201ENST00000583427 947 ntBASIC19.62■□□□□ 0.73
COL5A1P20908 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.62■□□□□ 0.73
COL5A1P20908 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.62■□□□□ 0.73
COL5A1P20908 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.62■□□□□ 0.73
COL5A1P20908 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A1P20908 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A1P20908 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC19.62■□□□□ 0.73
COL5A1P20908 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.62■□□□□ 0.73
COL5A1P20908 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
COL5A1P20908 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
COL5A1P20908 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms