Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH3P20585 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.21■□□□□ 0.83
MSH3P20585 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.21■□□□□ 0.83
MSH3P20585 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
MSH3P20585 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.21■□□□□ 0.83
MSH3P20585 MIR2861-201ENST00000636310 90 ntBASIC20.21■□□□□ 0.83
MSH3P20585 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MSH3P20585 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.83
MSH3P20585 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH3P20585 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH3P20585 AC087633.2-202ENST00000565166 1439 ntBASIC20.2■□□□□ 0.82
MSH3P20585 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH3P20585 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH3P20585 KRT18P68-201ENST00000392293 1000 ntBASIC20.2■□□□□ 0.82
MSH3P20585 TSPY6P-201ENST00000448518 926 ntBASIC20.2■□□□□ 0.82
MSH3P20585 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH3P20585 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.2■□□□□ 0.82
MSH3P20585 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.2■□□□□ 0.82
MSH3P20585 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH3P20585 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH3P20585 AC073130.3-201ENST00000624389 2278 ntBASIC20.2■□□□□ 0.82
MSH3P20585 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
MSH3P20585 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.2■□□□□ 0.82
MSH3P20585 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH3P20585 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.2■□□□□ 0.82
MSH3P20585 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
MSH3P20585 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSH3P20585 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
MSH3P20585 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.19■□□□□ 0.82
MSH3P20585 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 AC007225.1-201ENST00000566331 1836 ntBASIC20.19■□□□□ 0.82
MSH3P20585 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 ID1-201ENST00000376105 1233 ntBASIC20.19■□□□□ 0.82
MSH3P20585 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 BX276092.2-201ENST00000417668 665 ntBASIC20.19■□□□□ 0.82
MSH3P20585 HLA-L-209ENST00000420110 1011 ntBASIC20.19■□□□□ 0.82
MSH3P20585 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.19■□□□□ 0.82
MSH3P20585 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
MSH3P20585 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSH3P20585 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.19■□□□□ 0.82
MSH3P20585 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.18■□□□□ 0.82
MSH3P20585 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.18■□□□□ 0.82
MSH3P20585 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 LSM12P1-201ENST00000411836 588 ntBASIC20.18■□□□□ 0.82
MSH3P20585 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.18■□□□□ 0.82
MSH3P20585 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.18■□□□□ 0.82
MSH3P20585 AC104771.1-201ENST00000603335 964 ntBASIC20.18■□□□□ 0.82
MSH3P20585 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 AL356652.1-201ENST00000615962 565 ntBASIC20.18■□□□□ 0.82
MSH3P20585 AL589743.5-201ENST00000616611 1050 ntBASIC20.18■□□□□ 0.82
MSH3P20585 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.18■□□□□ 0.82
MSH3P20585 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
MSH3P20585 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
MSH3P20585 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSH3P20585 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
MSH3P20585 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
MSH3P20585 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
MSH3P20585 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSH3P20585 MIPEPP3-201ENST00000412105 444 ntBASIC20.17■□□□□ 0.82
MSH3P20585 GUSBP6-202ENST00000438529 1198 ntBASIC20.17■□□□□ 0.82
MSH3P20585 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.17■□□□□ 0.82
MSH3P20585 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms