Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.21■□□□□ 0.99
HMGA1P17096 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
HMGA1P17096 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
HMGA1P17096 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.2■□□□□ 0.98
HMGA1P17096 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HMGA1P17096 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
HMGA1P17096 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
HMGA1P17096 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGA1P17096 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.2■□□□□ 0.98
HMGA1P17096 AL596275.1-201ENST00000423464 877 ntBASIC21.2■□□□□ 0.98
HMGA1P17096 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HMGA1P17096 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HMGA1P17096 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGA1P17096 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.2■□□□□ 0.98
HMGA1P17096 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
HMGA1P17096 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
HMGA1P17096 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
HMGA1P17096 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGA1P17096 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGA1P17096 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGA1P17096 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGA1P17096 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HMGA1P17096 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
HMGA1P17096 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGA1P17096 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.19■□□□□ 0.98
HMGA1P17096 AL390719.1-204ENST00000412397 1219 ntBASIC21.19■□□□□ 0.98
HMGA1P17096 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGA1P17096 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.19■□□□□ 0.98
HMGA1P17096 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.19■□□□□ 0.98
HMGA1P17096 FAM197Y4-202ENST00000622692 608 ntBASIC21.19■□□□□ 0.98
HMGA1P17096 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGA1P17096 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
HMGA1P17096 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGA1P17096 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
HMGA1P17096 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.19■□□□□ 0.98
HMGA1P17096 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGA1P17096 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.19■□□□□ 0.98
HMGA1P17096 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.18■□□□□ 0.98
HMGA1P17096 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
HMGA1P17096 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.18■□□□□ 0.98
HMGA1P17096 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HMGA1P17096 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
HMGA1P17096 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HMGA1P17096 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
HMGA1P17096 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HMGA1P17096 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGA1P17096 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGA1P17096 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
HMGA1P17096 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 AC023632.3-201ENST00000521633 145 ntBASIC21.17■□□□□ 0.98
HMGA1P17096 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.17■□□□□ 0.98
HMGA1P17096 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGA1P17096 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
HMGA1P17096 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HMGA1P17096 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 AC026310.3-201ENST00000625186 2373 ntBASIC21.17■□□□□ 0.98
HMGA1P17096 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.17■□□□□ 0.98
HMGA1P17096 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGA1P17096 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGA1P17096 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGA1P17096 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC21.16■□□□□ 0.98
HMGA1P17096 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HMGA1P17096 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.16■□□□□ 0.98
HMGA1P17096 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms