Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 AL136116.3-201ENST00000402907 1138 ntBASIC18.04■□□□□ 0.48
LIMS3P0CW19 AC099791.1-201ENST00000416440 715 ntBASIC18.04■□□□□ 0.48
LIMS3P0CW19 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 AL136162.1-201ENST00000607711 1078 ntBASIC18.04■□□□□ 0.48
LIMS3P0CW19 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.04■□□□□ 0.48
LIMS3P0CW19 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LIMS3P0CW19 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 MIR572-201ENST00000384983 95 ntBASIC18.03■□□□□ 0.48
LIMS3P0CW19 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.03■□□□□ 0.48
LIMS3P0CW19 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.03■□□□□ 0.48
LIMS3P0CW19 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LIMS3P0CW19 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LIMS3P0CW19 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 AC245052.3-201ENST00000450182 901 ntBASIC18.02■□□□□ 0.48
LIMS3P0CW19 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.02■□□□□ 0.48
LIMS3P0CW19 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.02■□□□□ 0.47
LIMS3P0CW19 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
LIMS3P0CW19 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.02■□□□□ 0.47
LIMS3P0CW19 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.02■□□□□ 0.47
LIMS3P0CW19 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
LIMS3P0CW19 AC004408.2-201ENST00000623613 2777 ntBASIC18.02■□□□□ 0.47
LIMS3P0CW19 AC116050.2-201ENST00000612102 1779 ntBASIC18.02■□□□□ 0.47
LIMS3P0CW19 AC093484.2-201ENST00000580996 2166 ntBASIC18.01■□□□□ 0.47
LIMS3P0CW19 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 AC135279.3-201ENST00000610945 1311 ntBASIC18.01■□□□□ 0.47
LIMS3P0CW19 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIMS3P0CW19 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 KRT16P2-201ENST00000414673 1423 ntBASIC18.01■□□□□ 0.47
LIMS3P0CW19 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC18.01■□□□□ 0.47
LIMS3P0CW19 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMS3P0CW19 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMS3P0CW19 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
LIMS3P0CW19 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
LIMS3P0CW19 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms