Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC22.32■■□□□ 1.16
TPM1P09493 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 MIR572-201ENST00000384983 95 ntBASIC22.32■■□□□ 1.16
TPM1P09493 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC22.32■■□□□ 1.16
TPM1P09493 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.32■■□□□ 1.16
TPM1P09493 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.32■■□□□ 1.16
TPM1P09493 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.32■■□□□ 1.16
TPM1P09493 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
TPM1P09493 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC22.32■■□□□ 1.16
TPM1P09493 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
TPM1P09493 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.31■■□□□ 1.16
TPM1P09493 AC018445.3-201ENST00000624177 1945 ntBASIC22.31■■□□□ 1.16
TPM1P09493 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC22.31■■□□□ 1.16
TPM1P09493 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
TPM1P09493 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TPM1P09493 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.31■■□□□ 1.16
TPM1P09493 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC22.31■■□□□ 1.16
TPM1P09493 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC22.31■■□□□ 1.16
TPM1P09493 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
TPM1P09493 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
TPM1P09493 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
TPM1P09493 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
TPM1P09493 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
TPM1P09493 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
TPM1P09493 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TPM1P09493 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.31■■□□□ 1.16
TPM1P09493 MPST-204ENST00000404393 1329 ntTSL 5 BASIC22.31■■□□□ 1.16
TPM1P09493 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
TPM1P09493 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
TPM1P09493 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.3■■□□□ 1.16
TPM1P09493 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.3■■□□□ 1.16
TPM1P09493 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
TPM1P09493 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC22.3■■□□□ 1.16
TPM1P09493 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
TPM1P09493 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.29■■□□□ 1.16
TPM1P09493 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.29■■□□□ 1.16
TPM1P09493 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.29■■□□□ 1.16
TPM1P09493 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC22.29■■□□□ 1.16
TPM1P09493 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.29■■□□□ 1.16
TPM1P09493 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
TPM1P09493 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
TPM1P09493 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.28■■□□□ 1.16
TPM1P09493 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC22.28■■□□□ 1.16
TPM1P09493 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.28■■□□□ 1.16
TPM1P09493 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 AC245052.3-201ENST00000450182 901 ntBASIC22.28■■□□□ 1.16
TPM1P09493 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.28■■□□□ 1.16
TPM1P09493 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
TPM1P09493 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC22.28■■□□□ 1.16
TPM1P09493 TCF3P1-201ENST00000423021 1937 ntBASIC22.27■■□□□ 1.16
TPM1P09493 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC22.27■■□□□ 1.16
TPM1P09493 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
TPM1P09493 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
TPM1P09493 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
TPM1P09493 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC22.27■■□□□ 1.16
TPM1P09493 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
TPM1P09493 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.27■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms