Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TNFP01375 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TNFP01375 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
TNFP01375 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.9■□□□□ 0.78
TNFP01375 UBE2SP1-201ENST00000450587 669 ntBASIC19.9■□□□□ 0.78
TNFP01375 RPPH1-201ENST00000516869 333 ntBASIC19.9■□□□□ 0.78
TNFP01375 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC19.9■□□□□ 0.78
TNFP01375 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.9■□□□□ 0.78
TNFP01375 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.9■□□□□ 0.78
TNFP01375 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.9■□□□□ 0.78
TNFP01375 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
TNFP01375 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.9■□□□□ 0.78
TNFP01375 AC069544.1-201ENST00000609399 999 ntBASIC19.9■□□□□ 0.78
TNFP01375 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TNFP01375 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
TNFP01375 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.9■□□□□ 0.78
TNFP01375 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
TNFP01375 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TNFP01375 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.89■□□□□ 0.77
TNFP01375 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
TNFP01375 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.89■□□□□ 0.77
TNFP01375 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
TNFP01375 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.89■□□□□ 0.77
TNFP01375 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.89■□□□□ 0.77
TNFP01375 AC120498.8-201ENST00000614275 531 ntBASIC19.89■□□□□ 0.77
TNFP01375 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.77
TNFP01375 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
TNFP01375 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.89■□□□□ 0.77
TNFP01375 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
TNFP01375 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFP01375 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.88■□□□□ 0.77
TNFP01375 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC19.88■□□□□ 0.77
TNFP01375 AC233263.1-201ENST00000578059 224 ntBASIC19.88■□□□□ 0.77
TNFP01375 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.88■□□□□ 0.77
TNFP01375 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFP01375 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.88■□□□□ 0.77
TNFP01375 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.88■□□□□ 0.77
TNFP01375 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.88■□□□□ 0.77
TNFP01375 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
TNFP01375 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TNFP01375 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TNFP01375 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.87■□□□□ 0.77
TNFP01375 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.87■□□□□ 0.77
TNFP01375 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.87■□□□□ 0.77
TNFP01375 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.87■□□□□ 0.77
TNFP01375 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.87■□□□□ 0.77
TNFP01375 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
TNFP01375 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TNFP01375 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.86■□□□□ 0.77
TNFP01375 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TNFP01375 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
TNFP01375 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.86■□□□□ 0.77
TNFP01375 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
TNFP01375 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.86■□□□□ 0.77
TNFP01375 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
TNFP01375 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
TNFP01375 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms