Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.65■□□□□ 0.74
CLDN9O95484 AC026271.2-201ENST00000428091 497 ntBASIC19.65■□□□□ 0.74
CLDN9O95484 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.65■□□□□ 0.74
CLDN9O95484 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN9O95484 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.65■□□□□ 0.74
CLDN9O95484 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.65■□□□□ 0.74
CLDN9O95484 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN9O95484 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CLDN9O95484 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
CLDN9O95484 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
CLDN9O95484 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.64■□□□□ 0.74
CLDN9O95484 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CLDN9O95484 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.64■□□□□ 0.74
CLDN9O95484 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
CLDN9O95484 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.64■□□□□ 0.73
CLDN9O95484 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.64■□□□□ 0.73
CLDN9O95484 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.64■□□□□ 0.73
CLDN9O95484 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.64■□□□□ 0.73
CLDN9O95484 RARRES2P6-201ENST00000567333 442 ntBASIC19.64■□□□□ 0.73
CLDN9O95484 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.64■□□□□ 0.73
CLDN9O95484 AC013268.1-206ENST00000638368 961 ntBASIC19.64■□□□□ 0.73
CLDN9O95484 AC112229.1-201ENST00000639295 961 ntBASIC19.64■□□□□ 0.73
CLDN9O95484 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CLDN9O95484 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.64■□□□□ 0.73
CLDN9O95484 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.64■□□□□ 0.73
CLDN9O95484 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CLDN9O95484 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.63■□□□□ 0.73
CLDN9O95484 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.63■□□□□ 0.73
CLDN9O95484 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.63■□□□□ 0.73
CLDN9O95484 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CLDN9O95484 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 AC016769.1-201ENST00000409132 1010 ntBASIC19.63■□□□□ 0.73
CLDN9O95484 PGM5P4-201ENST00000421970 445 ntBASIC19.63■□□□□ 0.73
CLDN9O95484 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CLDN9O95484 AC007322.4-201ENST00000509611 723 ntBASIC19.63■□□□□ 0.73
CLDN9O95484 AL162412.1-201ENST00000567129 965 ntBASIC19.63■□□□□ 0.73
CLDN9O95484 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CLDN9O95484 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
CLDN9O95484 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CLDN9O95484 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CLDN9O95484 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CLDN9O95484 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN9O95484 SMG8-203ENST00000578922 2178 ntBASIC19.62■□□□□ 0.73
CLDN9O95484 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.62■□□□□ 0.73
CLDN9O95484 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.62■□□□□ 0.73
CLDN9O95484 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.62■□□□□ 0.73
CLDN9O95484 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
CLDN9O95484 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CLDN9O95484 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CLDN9O95484 AC112907.3-201ENST00000577781 2400 ntBASIC19.62■□□□□ 0.73
CLDN9O95484 PCDHAC2-203ENST00000615316 3011 ntBASIC19.62■□□□□ 0.73
CLDN9O95484 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CLDN9O95484 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.61■□□□□ 0.73
CLDN9O95484 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.61■□□□□ 0.73
CLDN9O95484 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
CLDN9O95484 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.61■□□□□ 0.73
CLDN9O95484 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.61■□□□□ 0.73
CLDN9O95484 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.61■□□□□ 0.73
CLDN9O95484 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms