Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 AP002982.1-201ENST00000492365 877 ntBASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
COL6A6A6NMZ7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 AC124283.5-201ENST00000624661 1809 ntBASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 ATP5G1P1-201ENST00000448724 379 ntBASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 AC116407.4-201ENST00000623319 1061 ntBASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 SAPCD2P2-201ENST00000431719 1174 ntBASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 AC023511.2-201ENST00000618803 211 ntBASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.42■□□□□ 0.54
COL6A6A6NMZ7 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 AL390719.1-204ENST00000412397 1219 ntBASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 CLN6-204ENST00000564752 900 ntTSL 3 BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
COL6A6A6NMZ7 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 KSR1P1-201ENST00000446298 240 ntBASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
COL6A6A6NMZ7 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 AC004264.1-201ENST00000608354 794 ntBASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
COL6A6A6NMZ7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.39■□□□□ 0.53
COL6A6A6NMZ7 CLEC4GP1-201ENST00000596555 870 ntBASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms