Protein–RNA interactions for Protein: A0A0B4J244

TRAV3, T-cell receptor alpha variable 3 (gene/pseudogene) (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV3A0A0B4J244 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV3A0A0B4J244 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 KRT18P61-201ENST00000585825 1298 ntBASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV3A0A0B4J244 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.33■□□□□ 0.21
TRAV3A0A0B4J244 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV3A0A0B4J244 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 AC007322.3-201ENST00000426526 701 ntBASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 AC019069.1-201ENST00000610008 1333 ntBASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV3A0A0B4J244 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 AC243732.1-201ENST00000612648 864 ntBASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRAV3A0A0B4J244 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms