Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 MIR663A-201ENST00000385250 93 ntBASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 AC100791.3-201ENST00000617619 330 ntBASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
ATG4BQ9Y4P1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 AC020907.5-201ENST00000624372 1936 ntBASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 AC087633.2-202ENST00000565166 1439 ntBASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 GABARAPL3-202ENST00000624044 1851 ntBASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 AC093787.1-201ENST00000450396 207 ntBASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
ATG4BQ9Y4P1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATG4BQ9Y4P1 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
ATG4BQ9Y4P1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
ATG4BQ9Y4P1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.27■□□□□ 0.67
ATG4BQ9Y4P1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 MCRIP2P1-201ENST00000394346 511 ntBASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 AC133552.2-202ENST00000575694 574 ntBASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.26■□□□□ 0.67
ATG4BQ9Y4P1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 LINC01521-201ENST00000504184 1943 ntBASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 ID1-201ENST00000376105 1233 ntBASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 AL355472.2-201ENST00000422958 438 ntBASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 AL356652.1-201ENST00000615962 565 ntBASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 AC010980.2-201ENST00000587099 1412 ntBASIC19.25■□□□□ 0.67
ATG4BQ9Y4P1 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 AC092720.2-201ENST00000602388 1665 ntBASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ATG4BQ9Y4P1 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms