Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 AC092667.1-201ENST00000434301 2586 ntBASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 AC087633.2-202ENST00000565166 1439 ntBASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS9D1Q9Y2B5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 DUX4L16-201ENST00000555130 1264 ntBASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 AC100791.3-201ENST00000617619 330 ntBASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 AC231657.2-201ENST00000624556 255 ntBASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS9D1Q9Y2B5 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
VPS9D1Q9Y2B5 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
VPS9D1Q9Y2B5 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
VPS9D1Q9Y2B5 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms