Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CHMP1AQ9HD42 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CHMP1AQ9HD42 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
CHMP1AQ9HD42 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 RNF146-206ENST00000480444 843 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 AL020996.1-203ENST00000536896 2307 ntBASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.45■□□□□ 0.38
CHMP1AQ9HD42 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.44■□□□□ 0.38
CHMP1AQ9HD42 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
CHMP1AQ9HD42 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
CHMP1AQ9HD42 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms