Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 AC097381.1-201ENST00000429019 1296 ntBASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
TRIM56Q9BRZ2 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.71■□□□□ 0.91
TRIM56Q9BRZ2 AC099778.1-201ENST00000568593 1911 ntBASIC20.7■□□□□ 0.91
TRIM56Q9BRZ2 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 AC245052.3-201ENST00000450182 901 ntBASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
TRIM56Q9BRZ2 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
TRIM56Q9BRZ2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.68■□□□□ 0.9
TRIM56Q9BRZ2 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM56Q9BRZ2 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms