Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ZNF560Q96MR9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.8■■□□□ 1.08
ZNF560Q96MR9 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
ZNF560Q96MR9 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 AC007375.3-201ENST00000600936 2314 ntBASIC21.78■■□□□ 1.08
ZNF560Q96MR9 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 MIR4651-201ENST00000582622 73 ntBASIC21.78■■□□□ 1.08
ZNF560Q96MR9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 AC092368.3-202ENST00000574180 1591 ntBASIC21.78■■□□□ 1.08
ZNF560Q96MR9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
ZNF560Q96MR9 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 UNC93B5-201ENST00000530315 699 ntBASIC21.77■■□□□ 1.08
ZNF560Q96MR9 PNMA6B-201ENST00000538162 1200 ntBASIC21.77■■□□□ 1.08
ZNF560Q96MR9 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
ZNF560Q96MR9 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF560Q96MR9 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.77■■□□□ 1.07
ZNF560Q96MR9 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
ZNF560Q96MR9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
ZNF560Q96MR9 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 ABHD17AP1-201ENST00000358206 933 ntBASIC21.76■■□□□ 1.07
ZNF560Q96MR9 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
ZNF560Q96MR9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 FP700111.2-201ENST00000619190 1892 ntBASIC21.75■■□□□ 1.07
ZNF560Q96MR9 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
ZNF560Q96MR9 TSPY20P-201ENST00000450910 630 ntBASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms