Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 PGM5P4-201ENST00000421970 445 ntBASIC20.97■□□□□ 0.95
TTC28Q96AY4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.97■□□□□ 0.95
TTC28Q96AY4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TTC28Q96AY4 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.97■□□□□ 0.95
TTC28Q96AY4 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.96■□□□□ 0.95
TTC28Q96AY4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TTC28Q96AY4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TTC28Q96AY4 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.95■□□□□ 0.94
TTC28Q96AY4 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.95■□□□□ 0.94
TTC28Q96AY4 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.95■□□□□ 0.94
TTC28Q96AY4 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TTC28Q96AY4 INGX-201ENST00000359239 846 ntBASIC20.95■□□□□ 0.94
TTC28Q96AY4 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC20.95■□□□□ 0.94
TTC28Q96AY4 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC20.95■□□□□ 0.94
TTC28Q96AY4 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 HMGA1P5-201ENST00000412453 271 ntBASIC20.94■□□□□ 0.94
TTC28Q96AY4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TTC28Q96AY4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.94■□□□□ 0.94
TTC28Q96AY4 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TTC28Q96AY4 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TTC28Q96AY4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TTC28Q96AY4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TTC28Q96AY4 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TTC28Q96AY4 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TTC28Q96AY4 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 NIFKP9-201ENST00000419265 221 ntBASIC20.93■□□□□ 0.94
TTC28Q96AY4 HMGN1P19-201ENST00000436976 333 ntBASIC20.93■□□□□ 0.94
TTC28Q96AY4 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.93■□□□□ 0.94
TTC28Q96AY4 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TTC28Q96AY4 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TTC28Q96AY4 AL845331.1-201ENST00000424978 1190 ntBASIC20.92■□□□□ 0.94
TTC28Q96AY4 FAAHP1-202ENST00000446499 1238 ntBASIC20.92■□□□□ 0.94
TTC28Q96AY4 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 CYP21A1P-202ENST00000354927 1481 ntBASIC20.92■□□□□ 0.94
TTC28Q96AY4 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TTC28Q96AY4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TTC28Q96AY4 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 MESTP1-201ENST00000404287 994 ntBASIC20.92■□□□□ 0.94
TTC28Q96AY4 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.92■□□□□ 0.94
TTC28Q96AY4 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TTC28Q96AY4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms