Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 KRT18P14-201ENST00000534205 1250 ntBASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ATG4AQ8WYN0 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 AC091799.1-201ENST00000422823 811 ntBASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 KRT18P61-201ENST00000585825 1298 ntBASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
ATG4AQ8WYN0 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.96
ATG4AQ8WYN0 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ATG4AQ8WYN0 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
ATG4AQ8WYN0 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC21.08■□□□□ 0.96
ATG4AQ8WYN0 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.08■□□□□ 0.96
ATG4AQ8WYN0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 RBM17P2-201ENST00000616397 1405 ntBASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ATG4AQ8WYN0 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.06■□□□□ 0.96
ATG4AQ8WYN0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 ZNRF2P3-201ENST00000424200 374 ntBASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
ATG4AQ8WYN0 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms