Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SNORA78-201ENST00000459373 127 ntBASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 USP48-205ENST00000421625 2818 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC6.24□□□□□ -1.41
SYNE1Q8NF91 HLA-B-256ENST00000639848 1089 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms