Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
RFX7Q2KHR2 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
RFX7Q2KHR2 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
RFX7Q2KHR2 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
RFX7Q2KHR2 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 AC060766.5-201ENST00000590539 871 ntBASIC24.7■■□□□ 1.55
RFX7Q2KHR2 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 AC008403.3-201ENST00000598924 454 ntBASIC24.7■■□□□ 1.55
RFX7Q2KHR2 AC006058.3-201ENST00000606217 1069 ntBASIC24.7■■□□□ 1.55
RFX7Q2KHR2 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
RFX7Q2KHR2 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 KRT8P36-201ENST00000489121 1440 ntBASIC24.7■■□□□ 1.54
RFX7Q2KHR2 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
RFX7Q2KHR2 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 AL589743.5-201ENST00000616611 1050 ntBASIC24.69■■□□□ 1.54
RFX7Q2KHR2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
RFX7Q2KHR2 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 AC128676.1-201ENST00000454392 318 ntBASIC24.68■■□□□ 1.54
RFX7Q2KHR2 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 HLA-B-256ENST00000639848 1089 ntBASIC24.68■■□□□ 1.54
RFX7Q2KHR2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 GCK-205ENST00000437084 1385 ntTSL 5 BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
RFX7Q2KHR2 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 AP005212.1-201ENST00000581547 1997 ntBASIC24.67■■□□□ 1.54
RFX7Q2KHR2 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 AL356652.1-201ENST00000615962 565 ntBASIC24.67■■□□□ 1.54
RFX7Q2KHR2 AC105020.6-201ENST00000621523 1217 ntBASIC24.67■■□□□ 1.54
RFX7Q2KHR2 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC24.67■■□□□ 1.54
RFX7Q2KHR2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 FP700111.2-201ENST00000619190 1892 ntBASIC24.66■■□□□ 1.54
RFX7Q2KHR2 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 MMD2-204ENST00000612910 778 ntTSL 5 BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 AC073648.6-201ENST00000641589 218 ntBASIC24.66■■□□□ 1.54
RFX7Q2KHR2 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC24.66■■□□□ 1.54
RFX7Q2KHR2 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC24.65■■□□□ 1.54
RFX7Q2KHR2 AL121603.2-201ENST00000557373 2117 ntBASIC24.65■■□□□ 1.54
RFX7Q2KHR2 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
RFX7Q2KHR2 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC24.65■■□□□ 1.54
RFX7Q2KHR2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
RFX7Q2KHR2 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
RFX7Q2KHR2 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC24.65■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms