Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGCS2P54868 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGCS2P54868 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGCS2P54868 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC23.66■■□□□ 1.38
HMGCS2P54868 FAM210CP-201ENST00000445714 574 ntBASIC23.66■■□□□ 1.38
HMGCS2P54868 TSPY15P-201ENST00000457163 923 ntBASIC23.66■■□□□ 1.38
HMGCS2P54868 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC23.66■■□□□ 1.38
HMGCS2P54868 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HMGCS2P54868 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGCS2P54868 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
HMGCS2P54868 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC23.66■■□□□ 1.38
HMGCS2P54868 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
HMGCS2P54868 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
HMGCS2P54868 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC23.65■■□□□ 1.38
HMGCS2P54868 DHDH-203ENST00000522614 776 ntTSL 5 BASIC23.65■■□□□ 1.38
HMGCS2P54868 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
HMGCS2P54868 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.65■■□□□ 1.38
HMGCS2P54868 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HMGCS2P54868 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC23.64■■□□□ 1.38
HMGCS2P54868 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGCS2P54868 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGCS2P54868 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
HMGCS2P54868 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGCS2P54868 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGCS2P54868 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGCS2P54868 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC23.64■■□□□ 1.37
HMGCS2P54868 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC23.64■■□□□ 1.37
HMGCS2P54868 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC23.64■■□□□ 1.37
HMGCS2P54868 CABP2-204ENST00000636477 941 ntTSL 5 BASIC23.64■■□□□ 1.37
HMGCS2P54868 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HMGCS2P54868 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGCS2P54868 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HMGCS2P54868 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC23.63■■□□□ 1.37
HMGCS2P54868 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
HMGCS2P54868 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC23.63■■□□□ 1.37
HMGCS2P54868 HES2-206ENST00000489730 730 ntTSL 2 BASIC23.63■■□□□ 1.37
HMGCS2P54868 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC23.63■■□□□ 1.37
HMGCS2P54868 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
HMGCS2P54868 PRKY-204ENST00000533551 1019 ntBASIC23.63■■□□□ 1.37
HMGCS2P54868 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23.63■■□□□ 1.37
HMGCS2P54868 RARRES2P10-201ENST00000564312 460 ntBASIC23.63■■□□□ 1.37
HMGCS2P54868 MIR4785-201ENST00000585005 73 ntBASIC23.63■■□□□ 1.37
HMGCS2P54868 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC23.63■■□□□ 1.37
HMGCS2P54868 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC23.63■■□□□ 1.37
HMGCS2P54868 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC23.62■■□□□ 1.37
HMGCS2P54868 ECEL1P1-201ENST00000373592 1742 ntBASIC23.62■■□□□ 1.37
HMGCS2P54868 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGCS2P54868 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
HMGCS2P54868 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HMGCS2P54868 AC011484.1-201ENST00000377652 1995 ntBASIC23.62■■□□□ 1.37
HMGCS2P54868 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC23.62■■□□□ 1.37
HMGCS2P54868 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
HMGCS2P54868 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGCS2P54868 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC23.62■■□□□ 1.37
HMGCS2P54868 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC23.62■■□□□ 1.37
HMGCS2P54868 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC23.62■■□□□ 1.37
HMGCS2P54868 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGCS2P54868 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.62■■□□□ 1.37
HMGCS2P54868 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.62■■□□□ 1.37
HMGCS2P54868 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGCS2P54868 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
HMGCS2P54868 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HMGCS2P54868 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.62■■□□□ 1.37
HMGCS2P54868 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGCS2P54868 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC23.61■■□□□ 1.37
HMGCS2P54868 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGCS2P54868 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGCS2P54868 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
HMGCS2P54868 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HMGCS2P54868 MIR1224-201ENST00000408193 85 ntBASIC23.61■■□□□ 1.37
HMGCS2P54868 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
HMGCS2P54868 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGCS2P54868 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HMGCS2P54868 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
HMGCS2P54868 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC23.6■■□□□ 1.37
HMGCS2P54868 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
HMGCS2P54868 PENK-204ENST00000518770 863 ntTSL 2 BASIC23.6■■□□□ 1.37
HMGCS2P54868 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC23.6■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms