Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.09■□□□□ 0.49
LIMS3P0CW19 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
LIMS3P0CW19 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIMS3P0CW19 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
LIMS3P0CW19 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
LIMS3P0CW19 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LIMS3P0CW19 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
LIMS3P0CW19 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIMS3P0CW19 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.08■□□□□ 0.49
LIMS3P0CW19 TSPY26P-201ENST00000476365 1326 ntBASIC18.08■□□□□ 0.49
LIMS3P0CW19 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIMS3P0CW19 AC024257.2-201ENST00000549699 147 ntBASIC18.08■□□□□ 0.48
LIMS3P0CW19 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMS3P0CW19 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIMS3P0CW19 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.08■□□□□ 0.48
LIMS3P0CW19 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 AC005332.7-201ENST00000614046 2005 ntBASIC18.07■□□□□ 0.48
LIMS3P0CW19 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 POU5F1P4-201ENST00000413175 1085 ntBASIC18.07■□□□□ 0.48
LIMS3P0CW19 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC18.07■□□□□ 0.48
LIMS3P0CW19 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIMS3P0CW19 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 TNXA-203ENST00000507684 2038 ntBASIC18.06■□□□□ 0.48
LIMS3P0CW19 AL691432.2-201ENST00000607222 2038 ntBASIC18.06■□□□□ 0.48
LIMS3P0CW19 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 AC008764.7-201ENST00000593779 1081 ntBASIC18.06■□□□□ 0.48
LIMS3P0CW19 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC18.06■□□□□ 0.48
LIMS3P0CW19 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIMS3P0CW19 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 TMEM179-206ENST00000616017 1645 ntBASIC18.05■□□□□ 0.48
LIMS3P0CW19 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 AC008175.2-201ENST00000612840 297 ntBASIC18.05■□□□□ 0.48
LIMS3P0CW19 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
LIMS3P0CW19 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC18.05■□□□□ 0.48
LIMS3P0CW19 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LIMS3P0CW19 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms