Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 KRT17P2-201ENST00000300992 1314 ntBASIC26.29■■□□□ 1.8
PTCD1O75127 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTCD1O75127 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
PTCD1O75127 STK25-205ENST00000405883 1904 ntTSL 2 BASIC26.29■■□□□ 1.8
PTCD1O75127 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
PTCD1O75127 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
PTCD1O75127 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC26.28■■□□□ 1.8
PTCD1O75127 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD1O75127 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD1O75127 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD1O75127 LINC01023-201ENST00000606054 436 ntBASIC26.28■■□□□ 1.8
PTCD1O75127 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
PTCD1O75127 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD1O75127 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC26.28■■□□□ 1.8
PTCD1O75127 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PTCD1O75127 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
PTCD1O75127 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
PTCD1O75127 MIR1224-201ENST00000408193 85 ntBASIC26.27■■□□□ 1.8
PTCD1O75127 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC26.27■■□□□ 1.8
PTCD1O75127 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC26.27■■□□□ 1.8
PTCD1O75127 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC26.27■■□□□ 1.8
PTCD1O75127 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC26.27■■□□□ 1.8
PTCD1O75127 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC26.27■■□□□ 1.8
PTCD1O75127 AC113410.3-201ENST00000623366 203 ntBASIC26.27■■□□□ 1.8
PTCD1O75127 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC26.27■■□□□ 1.8
PTCD1O75127 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
PTCD1O75127 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 ECEL1P1-201ENST00000373592 1742 ntBASIC26.27■■□□□ 1.8
PTCD1O75127 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
PTCD1O75127 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC26.27■■□□□ 1.8
PTCD1O75127 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 AC133561.1-201ENST00000568600 2415 ntBASIC26.26■■□□□ 1.79
PTCD1O75127 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC26.26■■□□□ 1.79
PTCD1O75127 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC26.26■■□□□ 1.79
PTCD1O75127 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC26.26■■□□□ 1.79
PTCD1O75127 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC26.26■■□□□ 1.79
PTCD1O75127 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
PTCD1O75127 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.26■■□□□ 1.79
PTCD1O75127 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC26.25■■□□□ 1.79
PTCD1O75127 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD1O75127 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC26.25■■□□□ 1.79
PTCD1O75127 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD1O75127 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD1O75127 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD1O75127 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
PTCD1O75127 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
PTCD1O75127 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC26.25■■□□□ 1.79
PTCD1O75127 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD1O75127 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
PTCD1O75127 KRT18P21-201ENST00000515767 1272 ntBASIC26.25■■□□□ 1.79
PTCD1O75127 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
PTCD1O75127 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC26.25■■□□□ 1.79
PTCD1O75127 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC26.24■■□□□ 1.79
PTCD1O75127 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC26.24■■□□□ 1.79
PTCD1O75127 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC26.24■■□□□ 1.79
PTCD1O75127 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC26.24■■□□□ 1.79
PTCD1O75127 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC26.24■■□□□ 1.79
PTCD1O75127 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC26.24■■□□□ 1.79
PTCD1O75127 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
PTCD1O75127 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PTCD1O75127 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC26.23■■□□□ 1.79
PTCD1O75127 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD1O75127 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD1O75127 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC26.23■■□□□ 1.79
PTCD1O75127 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD1O75127 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD1O75127 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC26.23■■□□□ 1.79
PTCD1O75127 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
PTCD1O75127 AP001412.1-201ENST00000608405 714 ntBASIC26.23■■□□□ 1.79
PTCD1O75127 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD1O75127 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
PTCD1O75127 AL135905.2-201ENST00000584934 1404 ntBASIC26.22■■□□□ 1.79
PTCD1O75127 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
PTCD1O75127 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC26.22■■□□□ 1.79
PTCD1O75127 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC26.22■■□□□ 1.79
PTCD1O75127 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC26.22■■□□□ 1.79
PTCD1O75127 DHDH-203ENST00000522614 776 ntTSL 5 BASIC26.22■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms