Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
BRD4O60885 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC28.26■■■□□ 2.12
BRD4O60885 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC28.26■■■□□ 2.12
BRD4O60885 KLF2-202ENST00000592003 564 ntTSL 3 BASIC28.26■■■□□ 2.12
BRD4O60885 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC28.26■■■□□ 2.12
BRD4O60885 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRD4O60885 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRD4O60885 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC28.26■■■□□ 2.11
BRD4O60885 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRD4O60885 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC28.26■■■□□ 2.11
BRD4O60885 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC28.26■■■□□ 2.11
BRD4O60885 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRD4O60885 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC28.26■■■□□ 2.11
BRD4O60885 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 MFF-205ENST00000354503 1085 ntTSL 2 BASIC28.25■■■□□ 2.11
BRD4O60885 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC28.25■■■□□ 2.11
BRD4O60885 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 SOX15-203ENST00000570788 1093 ntBASIC28.25■■■□□ 2.11
BRD4O60885 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC28.25■■■□□ 2.11
BRD4O60885 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC28.25■■■□□ 2.11
BRD4O60885 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC28.25■■■□□ 2.11
BRD4O60885 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC28.25■■■□□ 2.11
BRD4O60885 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC28.25■■■□□ 2.11
BRD4O60885 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC28.25■■■□□ 2.11
BRD4O60885 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC28.24■■■□□ 2.11
BRD4O60885 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC28.24■■■□□ 2.11
BRD4O60885 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC28.24■■■□□ 2.11
BRD4O60885 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
BRD4O60885 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
BRD4O60885 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
BRD4O60885 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC28.24■■■□□ 2.11
BRD4O60885 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
BRD4O60885 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC28.23■■■□□ 2.11
BRD4O60885 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
BRD4O60885 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
BRD4O60885 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
BRD4O60885 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC28.23■■■□□ 2.11
BRD4O60885 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC28.23■■■□□ 2.11
BRD4O60885 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC28.23■■■□□ 2.11
BRD4O60885 AC116050.2-201ENST00000612102 1779 ntBASIC28.23■■■□□ 2.11
BRD4O60885 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC28.23■■■□□ 2.11
BRD4O60885 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC28.23■■■□□ 2.11
BRD4O60885 POM121L13P-201ENST00000422362 380 ntBASIC28.23■■■□□ 2.11
BRD4O60885 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
BRD4O60885 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC28.23■■■□□ 2.11
BRD4O60885 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC28.23■■■□□ 2.11
BRD4O60885 C1QBPP2-201ENST00000528754 825 ntBASIC28.23■■■□□ 2.11
BRD4O60885 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC28.23■■■□□ 2.11
BRD4O60885 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC28.23■■■□□ 2.11
BRD4O60885 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 REXO2-208ENST00000539754 791 ntTSL 2 BASIC28.22■■■□□ 2.11
BRD4O60885 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC28.22■■■□□ 2.11
BRD4O60885 AC087633.2-202ENST00000565166 1439 ntBASIC28.22■■■□□ 2.11
BRD4O60885 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC28.22■■■□□ 2.11
BRD4O60885 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
BRD4O60885 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC28.22■■■□□ 2.11
BRD4O60885 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC28.21■■■□□ 2.11
BRD4O60885 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
BRD4O60885 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
BRD4O60885 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC28.21■■■□□ 2.11
BRD4O60885 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
BRD4O60885 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC28.21■■■□□ 2.11
BRD4O60885 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
BRD4O60885 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
BRD4O60885 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC28.21■■■□□ 2.11
BRD4O60885 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC28.21■■■□□ 2.11
BRD4O60885 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC28.21■■■□□ 2.11
BRD4O60885 AC233263.1-201ENST00000578059 224 ntBASIC28.21■■■□□ 2.11
BRD4O60885 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC28.21■■■□□ 2.11
BRD4O60885 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC28.21■■■□□ 2.11
BRD4O60885 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
BRD4O60885 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC28.21■■■□□ 2.11
BRD4O60885 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
BRD4O60885 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
BRD4O60885 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.1
BRD4O60885 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC28.2■■■□□ 2.1
BRD4O60885 MIR4497-201ENST00000583208 89 ntBASIC28.2■■■□□ 2.1
BRD4O60885 FAM197Y4-202ENST00000622692 608 ntBASIC28.2■■■□□ 2.1
BRD4O60885 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC28.2■■■□□ 2.1
BRD4O60885 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC28.2■■■□□ 2.1
BRD4O60885 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC28.2■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms