Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.24■□□□□ 0.83
PHGDHO43175 RBM17P2-201ENST00000616397 1405 ntBASIC20.24■□□□□ 0.83
PHGDHO43175 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
PHGDHO43175 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.24■□□□□ 0.83
PHGDHO43175 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
PHGDHO43175 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
PHGDHO43175 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
PHGDHO43175 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PHGDHO43175 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
PHGDHO43175 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
PHGDHO43175 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PHGDHO43175 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
PHGDHO43175 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.23■□□□□ 0.83
PHGDHO43175 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.23■□□□□ 0.83
PHGDHO43175 SMG8-203ENST00000578922 2178 ntBASIC20.23■□□□□ 0.83
PHGDHO43175 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.23■□□□□ 0.83
PHGDHO43175 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.23■□□□□ 0.83
PHGDHO43175 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.23■□□□□ 0.83
PHGDHO43175 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
PHGDHO43175 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
PHGDHO43175 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.22■□□□□ 0.83
PHGDHO43175 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
PHGDHO43175 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
PHGDHO43175 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
PHGDHO43175 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.22■□□□□ 0.83
PHGDHO43175 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.22■□□□□ 0.83
PHGDHO43175 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.22■□□□□ 0.83
PHGDHO43175 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.22■□□□□ 0.83
PHGDHO43175 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PHGDHO43175 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.22■□□□□ 0.83
PHGDHO43175 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.22■□□□□ 0.83
PHGDHO43175 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PHGDHO43175 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
PHGDHO43175 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.22■□□□□ 0.83
PHGDHO43175 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
PHGDHO43175 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
PHGDHO43175 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
PHGDHO43175 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.21■□□□□ 0.83
PHGDHO43175 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
PHGDHO43175 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.21■□□□□ 0.83
PHGDHO43175 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.21■□□□□ 0.83
PHGDHO43175 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.21■□□□□ 0.83
PHGDHO43175 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
PHGDHO43175 AC019069.1-201ENST00000610008 1333 ntBASIC20.21■□□□□ 0.83
PHGDHO43175 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
PHGDHO43175 BID-204ENST00000399767 2129 ntTSL 2 BASIC20.2■□□□□ 0.82
PHGDHO43175 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.2■□□□□ 0.82
PHGDHO43175 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
PHGDHO43175 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.2■□□□□ 0.82
PHGDHO43175 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.2■□□□□ 0.82
PHGDHO43175 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC20.2■□□□□ 0.82
PHGDHO43175 AC243732.1-201ENST00000612648 864 ntBASIC20.2■□□□□ 0.82
PHGDHO43175 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.2■□□□□ 0.82
PHGDHO43175 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.2■□□□□ 0.82
PHGDHO43175 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
PHGDHO43175 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
PHGDHO43175 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
PHGDHO43175 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
PHGDHO43175 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC20.19■□□□□ 0.82
PHGDHO43175 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
PHGDHO43175 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.19■□□□□ 0.82
PHGDHO43175 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.19■□□□□ 0.82
PHGDHO43175 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms