Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SLC28A1O00337 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.6■□□□□ 0.73
SLC28A1O00337 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SLC28A1O00337 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SLC28A1O00337 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SLC28A1O00337 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC19.6■□□□□ 0.73
SLC28A1O00337 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SLC28A1O00337 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
SLC28A1O00337 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
SLC28A1O00337 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SLC28A1O00337 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
SLC28A1O00337 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SLC28A1O00337 AC019069.1-201ENST00000610008 1333 ntBASIC19.59■□□□□ 0.73
SLC28A1O00337 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
SLC28A1O00337 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 KRT19P1-201ENST00000405746 1186 ntBASIC19.59■□□□□ 0.73
SLC28A1O00337 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 CD44-222ENST00000526025 1052 ntTSL 2 BASIC19.59■□□□□ 0.73
SLC28A1O00337 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.59■□□□□ 0.73
SLC28A1O00337 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.59■□□□□ 0.73
SLC28A1O00337 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SLC28A1O00337 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.59■□□□□ 0.73
SLC28A1O00337 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
SLC28A1O00337 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SLC28A1O00337 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SLC28A1O00337 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
SLC28A1O00337 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.58■□□□□ 0.73
SLC28A1O00337 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SLC28A1O00337 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SLC28A1O00337 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.58■□□□□ 0.72
SLC28A1O00337 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC19.58■□□□□ 0.72
SLC28A1O00337 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.58■□□□□ 0.72
SLC28A1O00337 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.58■□□□□ 0.72
SLC28A1O00337 AC112907.3-201ENST00000577781 2400 ntBASIC19.58■□□□□ 0.72
SLC28A1O00337 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SLC28A1O00337 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SLC28A1O00337 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SLC28A1O00337 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SLC28A1O00337 KRT8P36-201ENST00000489121 1440 ntBASIC19.58■□□□□ 0.72
SLC28A1O00337 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.58■□□□□ 0.72
SLC28A1O00337 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SLC28A1O00337 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.57■□□□□ 0.72
SLC28A1O00337 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.57■□□□□ 0.72
SLC28A1O00337 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.57■□□□□ 0.72
SLC28A1O00337 CDV3P1-201ENST00000471403 739 ntBASIC19.57■□□□□ 0.72
SLC28A1O00337 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.57■□□□□ 0.72
SLC28A1O00337 FAM21FP-204ENST00000608637 956 ntBASIC19.57■□□□□ 0.72
SLC28A1O00337 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.57■□□□□ 0.72
SLC28A1O00337 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 PCDHAC2-203ENST00000615316 3011 ntBASIC19.57■□□□□ 0.72
SLC28A1O00337 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SLC28A1O00337 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.57■□□□□ 0.72
SLC28A1O00337 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
SLC28A1O00337 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SLC28A1O00337 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.56■□□□□ 0.72
SLC28A1O00337 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.56■□□□□ 0.72
SLC28A1O00337 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.56■□□□□ 0.72
SLC28A1O00337 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.56■□□□□ 0.72
SLC28A1O00337 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
SLC28A1O00337 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
SLC28A1O00337 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.56■□□□□ 0.72
SLC28A1O00337 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SLC28A1O00337 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms