Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.99■□□□□ 0.95
VPS28Q9UK41 AL589743.5-201ENST00000616611 1050 ntBASIC20.99■□□□□ 0.95
VPS28Q9UK41 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
VPS28Q9UK41 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 KRT18P68-201ENST00000392293 1000 ntBASIC20.98■□□□□ 0.95
VPS28Q9UK41 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.98■□□□□ 0.95
VPS28Q9UK41 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
VPS28Q9UK41 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 DUSP5P2-201ENST00000426873 1033 ntBASIC20.97■□□□□ 0.95
VPS28Q9UK41 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
VPS28Q9UK41 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.97■□□□□ 0.95
VPS28Q9UK41 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 AC121338.2-201ENST00000622535 1744 ntBASIC20.96■□□□□ 0.95
VPS28Q9UK41 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS28Q9UK41 OR2A1-AS1-201ENST00000462305 773 ntBASIC20.96■□□□□ 0.95
VPS28Q9UK41 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS28Q9UK41 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
VPS28Q9UK41 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.96■□□□□ 0.95
VPS28Q9UK41 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS28Q9UK41 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
VPS28Q9UK41 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
VPS28Q9UK41 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 AL121603.2-201ENST00000557373 2117 ntBASIC20.95■□□□□ 0.94
VPS28Q9UK41 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 AC097658.1-201ENST00000475555 843 ntBASIC20.95■□□□□ 0.94
VPS28Q9UK41 AC091874.3-201ENST00000512672 1195 ntBASIC20.95■□□□□ 0.94
VPS28Q9UK41 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
VPS28Q9UK41 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.95■□□□□ 0.94
VPS28Q9UK41 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS28Q9UK41 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
VPS28Q9UK41 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
VPS28Q9UK41 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.94■□□□□ 0.94
VPS28Q9UK41 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.94■□□□□ 0.94
VPS28Q9UK41 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms