Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 AC073314.1-201ENST00000568729 2216 ntBASIC19.37■□□□□ 0.69
SCN3AQ9NY46 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SCN3AQ9NY46 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 AC007225.1-201ENST00000566331 1836 ntBASIC19.36■□□□□ 0.69
SCN3AQ9NY46 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 KLF13-207ENST00000560473 489 ntTSL 3 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.36■□□□□ 0.69
SCN3AQ9NY46 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.35■□□□□ 0.69
SCN3AQ9NY46 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.35■□□□□ 0.69
SCN3AQ9NY46 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 AC091874.3-201ENST00000512672 1195 ntBASIC19.35■□□□□ 0.69
SCN3AQ9NY46 AC105020.6-201ENST00000621523 1217 ntBASIC19.35■□□□□ 0.69
SCN3AQ9NY46 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 AC069152.1-201ENST00000438030 544 ntBASIC19.35■□□□□ 0.69
SCN3AQ9NY46 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SCN3AQ9NY46 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 AC073210.2-201ENST00000430369 194 ntBASIC19.34■□□□□ 0.69
SCN3AQ9NY46 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 GATS-209ENST00000454084 1030 ntTSL 3 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SCN3AQ9NY46 AC027702.1-201ENST00000563810 1770 ntBASIC19.33■□□□□ 0.69
SCN3AQ9NY46 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.33■□□□□ 0.69
SCN3AQ9NY46 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SCN3AQ9NY46 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SCN3AQ9NY46 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SCN3AQ9NY46 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.33■□□□□ 0.68
SCN3AQ9NY46 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
SCN3AQ9NY46 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 KRT18P68-201ENST00000392293 1000 ntBASIC19.32■□□□□ 0.68
SCN3AQ9NY46 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 AC092667.1-201ENST00000434301 2586 ntBASIC19.32■□□□□ 0.68
SCN3AQ9NY46 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.32■□□□□ 0.68
SCN3AQ9NY46 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms