Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
DDX4Q9NQI0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 AC012676.1-201ENST00000574705 1949 ntBASIC24.24■■□□□ 1.47
DDX4Q9NQI0 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
DDX4Q9NQI0 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 SERF2-207ENST00000409614 582 ntTSL 2 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
DDX4Q9NQI0 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 ISG20-202ENST00000379224 540 ntTSL 3 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
DDX4Q9NQI0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 AC027702.1-201ENST00000563810 1770 ntBASIC24.21■■□□□ 1.47
DDX4Q9NQI0 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
DDX4Q9NQI0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC24.2■■□□□ 1.47
DDX4Q9NQI0 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.2■■□□□ 1.46
DDX4Q9NQI0 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 STAC-204ENST00000457375 1366 ntTSL 2 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 STK25-234ENST00000535007 2459 ntTSL 2 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 LY6E-205ENST00000519611 635 ntTSL 3 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC24.19■■□□□ 1.46
DDX4Q9NQI0 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms