Protein–RNA interactions for Protein: Q9H270

VPS11, Vacuolar protein sorting-associated protein 11 homolog, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11Q9H270 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
VPS11Q9H270 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VPS11Q9H270 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
VPS11Q9H270 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS11Q9H270 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
VPS11Q9H270 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC20.49■□□□□ 0.87
VPS11Q9H270 TPRG1LP1-201ENST00000598702 760 ntBASIC20.49■□□□□ 0.87
VPS11Q9H270 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
VPS11Q9H270 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
VPS11Q9H270 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
VPS11Q9H270 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS11Q9H270 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS11Q9H270 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS11Q9H270 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
VPS11Q9H270 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS11Q9H270 AL354811.1-201ENST00000610286 706 ntBASIC20.48■□□□□ 0.87
VPS11Q9H270 AC008175.2-201ENST00000612840 297 ntBASIC20.48■□□□□ 0.87
VPS11Q9H270 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS11Q9H270 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS11Q9H270 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
VPS11Q9H270 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS11Q9H270 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS11Q9H270 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
VPS11Q9H270 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS11Q9H270 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS11Q9H270 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VPS11Q9H270 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS11Q9H270 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS11Q9H270 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS11Q9H270 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS11Q9H270 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 CPT2-209ENST00000636935 803 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS11Q9H270 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
VPS11Q9H270 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS11Q9H270 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS11Q9H270 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
VPS11Q9H270 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VPS11Q9H270 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS11Q9H270 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS11Q9H270 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS11Q9H270 MIR6084-201ENST00000622012 110 ntBASIC20.46■□□□□ 0.87
VPS11Q9H270 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
VPS11Q9H270 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
VPS11Q9H270 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
VPS11Q9H270 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS11Q9H270 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS11Q9H270 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VPS11Q9H270 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS11Q9H270 AC079140.4-201ENST00000507448 529 ntBASIC20.45■□□□□ 0.86
VPS11Q9H270 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.45■□□□□ 0.86
VPS11Q9H270 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
VPS11Q9H270 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
VPS11Q9H270 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS11Q9H270 TCF3P1-201ENST00000423021 1937 ntBASIC20.45■□□□□ 0.86
VPS11Q9H270 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VPS11Q9H270 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms