Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
TRIM56Q9BRZ2 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM56Q9BRZ2 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
TRIM56Q9BRZ2 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 AP001160.3-201ENST00000601484 763 ntBASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 MIR6821-201ENST00000617625 74 ntBASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.76■□□□□ 0.91
TRIM56Q9BRZ2 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 AC123595.1-201ENST00000440769 1046 ntBASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 KRT18P14-201ENST00000534205 1250 ntBASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 KRT16P2-201ENST00000414673 1423 ntBASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.75■□□□□ 0.91
TRIM56Q9BRZ2 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 AC092666.2-201ENST00000613287 246 ntBASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 AL162377.1-201ENST00000618844 1793 ntBASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.74■□□□□ 0.91
TRIM56Q9BRZ2 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L2-201ENST00000561772 1275 ntBASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L6-201ENST00000626483 1275 ntBASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L1-201ENST00000627662 1275 ntBASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L8-201ENST00000629013 1275 ntBASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L3-201ENST00000630187 1275 ntBASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L7-201ENST00000630678 1275 ntBASIC20.73■□□□□ 0.91
TRIM56Q9BRZ2 DUX4L5-201ENST00000630834 1275 ntBASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms