Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PAAF1Q9BRP4 FEM1AP4-201ENST00000443167 1987 ntBASIC21.88■■□□□ 1.09
PAAF1Q9BRP4 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.88■■□□□ 1.09
PAAF1Q9BRP4 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
PAAF1Q9BRP4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.88■■□□□ 1.09
PAAF1Q9BRP4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PAAF1Q9BRP4 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 AC027702.1-201ENST00000563810 1770 ntBASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.87■■□□□ 1.09
PAAF1Q9BRP4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 KRT17P3-201ENST00000420566 1262 ntBASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 AC069544.1-201ENST00000609399 999 ntBASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
PAAF1Q9BRP4 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 RPPH1-201ENST00000516869 333 ntBASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 AC006557.6-201ENST00000623071 864 ntBASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
PAAF1Q9BRP4 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 POM121L13P-201ENST00000422362 380 ntBASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 C1QBPP2-201ENST00000528754 825 ntBASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 RN7SL471P-201ENST00000580476 299 ntBASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
PAAF1Q9BRP4 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
PAAF1Q9BRP4 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 AC121338.2-201ENST00000622535 1744 ntBASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
PAAF1Q9BRP4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PAAF1Q9BRP4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms