Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VPS13AQ96RL7 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 AL353807.1-201ENST00000427475 662 ntBASIC20.37■□□□□ 0.85
VPS13AQ96RL7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.37■□□□□ 0.85
VPS13AQ96RL7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 KRT18P48-201ENST00000434763 852 ntBASIC20.36■□□□□ 0.85
VPS13AQ96RL7 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.36■□□□□ 0.85
VPS13AQ96RL7 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
VPS13AQ96RL7 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 AC007322.3-201ENST00000426526 701 ntBASIC20.35■□□□□ 0.85
VPS13AQ96RL7 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 MIR1238-201ENST00000408483 83 ntBASIC20.35■□□□□ 0.85
VPS13AQ96RL7 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
VPS13AQ96RL7 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 AL137013.1-201ENST00000432946 1228 ntBASIC20.34■□□□□ 0.85
VPS13AQ96RL7 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 BX664615.1-201ENST00000443558 458 ntBASIC20.34■□□□□ 0.85
VPS13AQ96RL7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 AC139530.1-201ENST00000575312 1977 ntBASIC20.34■□□□□ 0.85
VPS13AQ96RL7 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 KRT16P5-201ENST00000455284 522 ntBASIC20.34■□□□□ 0.85
VPS13AQ96RL7 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 AC068473.5-201ENST00000616428 2072 ntBASIC20.34■□□□□ 0.85
VPS13AQ96RL7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VPS13AQ96RL7 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VPS13AQ96RL7 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms