Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 AC133041.1-202ENST00000642053 222 ntBASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PTCHD1Q96NR3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
PTCHD1Q96NR3 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 KRT17P1-201ENST00000399211 1546 ntBASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 AC069152.1-201ENST00000438030 544 ntBASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 AC092118.2-201ENST00000613495 667 ntBASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 AL589743.5-201ENST00000616611 1050 ntBASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 PLK5-205ENST00000642079 1969 ntBASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.22■□□□□ 0.67
PTCHD1Q96NR3 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.21■□□□□ 0.67
PTCHD1Q96NR3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 AC027702.1-201ENST00000563810 1770 ntBASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 PGM5P4-201ENST00000421970 445 ntBASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 AC073210.2-201ENST00000430369 194 ntBASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 AC098934.4-201ENST00000564127 592 ntBASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.2■□□□□ 0.66
PTCHD1Q96NR3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC19.19■□□□□ 0.66
PTCHD1Q96NR3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 11 ms