Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AL158047.1-201ENST00000445918 881 ntBASIC6.27□□□□□ -1.41
SYNE1Q8NF91 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 Z99916.2-201ENST00000604037 246 ntBASIC6.27□□□□□ -1.41
SYNE1Q8NF91 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 VMO1-204ENST00000441199 741 ntTSL 2 BASIC6.27□□□□□ -1.41
SYNE1Q8NF91 AC097658.1-201ENST00000475555 843 ntBASIC6.27□□□□□ -1.41
SYNE1Q8NF91 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 BET1L-204ENST00000410108 637 ntTSL 3 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 PNMA6B-201ENST00000538162 1200 ntBASIC6.26□□□□□ -1.41
SYNE1Q8NF91 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 CLDN5-201ENST00000403084 2357 ntBASIC6.26□□□□□ -1.41
SYNE1Q8NF91 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 ITM2C-210ENST00000620962 501 ntBASIC6.26□□□□□ -1.41
SYNE1Q8NF91 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 AC139530.1-201ENST00000575312 1977 ntBASIC6.26□□□□□ -1.41
SYNE1Q8NF91 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC6.26□□□□□ -1.41
SYNE1Q8NF91 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 NARF-205ENST00000412079 1760 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 AL391422.3-201ENST00000603791 2761 ntBASIC6.25□□□□□ -1.41
SYNE1Q8NF91 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 C11orf96-202ENST00000528572 1834 ntBASIC6.25□□□□□ -1.41
SYNE1Q8NF91 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 AC211429.1-201ENST00000415277 523 ntBASIC6.25□□□□□ -1.41
SYNE1Q8NF91 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 AC100791.3-201ENST00000617619 330 ntBASIC6.25□□□□□ -1.41
SYNE1Q8NF91 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SYNE1Q8NF91 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms