Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 ITM2C-210ENST00000620962 501 ntBASIC18.94■□□□□ 0.62
BEST3Q8N1M1 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
BEST3Q8N1M1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
BEST3Q8N1M1 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 AC244015.2-201ENST00000616358 1861 ntBASIC18.92■□□□□ 0.62
BEST3Q8N1M1 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 FBXW4P1-201ENST00000426721 2239 ntBASIC18.92■□□□□ 0.62
BEST3Q8N1M1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
BEST3Q8N1M1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 UNC93B5-201ENST00000530315 699 ntBASIC18.91■□□□□ 0.62
BEST3Q8N1M1 AC008687.6-201ENST00000596318 630 ntBASIC18.91■□□□□ 0.62
BEST3Q8N1M1 AC105020.6-201ENST00000621523 1217 ntBASIC18.91■□□□□ 0.62
BEST3Q8N1M1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.91■□□□□ 0.62
BEST3Q8N1M1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.91■□□□□ 0.62
BEST3Q8N1M1 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
BEST3Q8N1M1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
BEST3Q8N1M1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
BEST3Q8N1M1 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 PRORSD1P-201ENST00000295112 541 ntBASIC18.89■□□□□ 0.61
BEST3Q8N1M1 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.89■□□□□ 0.61
BEST3Q8N1M1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms