Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RFX4Q33E94 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.93■□□□□ 0.62
RFX4Q33E94 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.93■□□□□ 0.62
RFX4Q33E94 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.93■□□□□ 0.62
RFX4Q33E94 AC131212.1-201ENST00000613771 668 ntBASIC18.93■□□□□ 0.62
RFX4Q33E94 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 BX005040.4-201ENST00000637145 1518 ntBASIC18.93■□□□□ 0.62
RFX4Q33E94 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
RFX4Q33E94 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
RFX4Q33E94 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
RFX4Q33E94 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
RFX4Q33E94 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.92■□□□□ 0.62
RFX4Q33E94 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
RFX4Q33E94 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.92■□□□□ 0.62
RFX4Q33E94 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 AC008764.7-201ENST00000593779 1081 ntBASIC18.92■□□□□ 0.62
RFX4Q33E94 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
RFX4Q33E94 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.92■□□□□ 0.62
RFX4Q33E94 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
RFX4Q33E94 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.92■□□□□ 0.62
RFX4Q33E94 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.92■□□□□ 0.62
RFX4Q33E94 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
RFX4Q33E94 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.91■□□□□ 0.62
RFX4Q33E94 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX4Q33E94 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
RFX4Q33E94 AC105233.4-201ENST00000642045 216 ntBASIC18.91■□□□□ 0.62
RFX4Q33E94 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.91■□□□□ 0.62
RFX4Q33E94 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RFX4Q33E94 AC138932.1-201ENST00000534164 6830 ntBASIC18.91■□□□□ 0.62
RFX4Q33E94 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
RFX4Q33E94 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
RFX4Q33E94 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.91■□□□□ 0.62
RFX4Q33E94 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
RFX4Q33E94 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
RFX4Q33E94 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
RFX4Q33E94 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
RFX4Q33E94 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.9■□□□□ 0.62
RFX4Q33E94 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RFX4Q33E94 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.9■□□□□ 0.62
RFX4Q33E94 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RFX4Q33E94 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
RFX4Q33E94 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC18.9■□□□□ 0.62
RFX4Q33E94 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.9■□□□□ 0.62
RFX4Q33E94 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
RFX4Q33E94 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC18.9■□□□□ 0.62
RFX4Q33E94 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
RFX4Q33E94 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms