Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC19.46■□□□□ 0.71
FOXC1Q12948 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXC1Q12948 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXC1Q12948 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC19.46■□□□□ 0.71
FOXC1Q12948 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.46■□□□□ 0.71
FOXC1Q12948 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC19.46■□□□□ 0.71
FOXC1Q12948 AL121829.2-201ENST00000620908 328 ntBASIC19.46■□□□□ 0.71
FOXC1Q12948 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.46■□□□□ 0.71
FOXC1Q12948 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
FOXC1Q12948 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXC1Q12948 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
FOXC1Q12948 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC19.45■□□□□ 0.7
FOXC1Q12948 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
FOXC1Q12948 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
FOXC1Q12948 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC19.45■□□□□ 0.7
FOXC1Q12948 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.45■□□□□ 0.7
FOXC1Q12948 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC19.45■□□□□ 0.7
FOXC1Q12948 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.45■□□□□ 0.7
FOXC1Q12948 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
FOXC1Q12948 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
FOXC1Q12948 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
FOXC1Q12948 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
FOXC1Q12948 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
FOXC1Q12948 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
FOXC1Q12948 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.44■□□□□ 0.7
FOXC1Q12948 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 CRYGFP-201ENST00000418459 633 ntBASIC19.44■□□□□ 0.7
FOXC1Q12948 PGM5P4-201ENST00000421970 445 ntBASIC19.44■□□□□ 0.7
FOXC1Q12948 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.44■□□□□ 0.7
FOXC1Q12948 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
FOXC1Q12948 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.44■□□□□ 0.7
FOXC1Q12948 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
FOXC1Q12948 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
FOXC1Q12948 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
FOXC1Q12948 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.43■□□□□ 0.7
FOXC1Q12948 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 AC087742.1-201ENST00000575880 1738 ntBASIC19.43■□□□□ 0.7
FOXC1Q12948 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 COPE-203ENST00000351079 907 ntTSL 2 BASIC19.43■□□□□ 0.7
FOXC1Q12948 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.43■□□□□ 0.7
FOXC1Q12948 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC19.43■□□□□ 0.7
FOXC1Q12948 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.43■□□□□ 0.7
FOXC1Q12948 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 AK4P3-201ENST00000418260 669 ntBASIC19.43■□□□□ 0.7
FOXC1Q12948 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.43■□□□□ 0.7
FOXC1Q12948 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC19.43■□□□□ 0.7
FOXC1Q12948 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.43■□□□□ 0.7
FOXC1Q12948 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.43■□□□□ 0.7
FOXC1Q12948 LINC01238-205ENST00000567549 1107 ntBASIC19.43■□□□□ 0.7
FOXC1Q12948 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.43■□□□□ 0.7
FOXC1Q12948 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
FOXC1Q12948 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
FOXC1Q12948 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
FOXC1Q12948 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXC1Q12948 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXC1Q12948 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXC1Q12948 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXC1Q12948 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
FOXC1Q12948 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXC1Q12948 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXC1Q12948 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
FOXC1Q12948 AC022616.7-201ENST00000525383 220 ntBASIC19.42■□□□□ 0.7
FOXC1Q12948 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.42■□□□□ 0.7
FOXC1Q12948 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXC1Q12948 AC004264.1-201ENST00000608354 794 ntBASIC19.42■□□□□ 0.7
FOXC1Q12948 CR392000.1-201ENST00000624770 1228 ntBASIC19.42■□□□□ 0.7
FOXC1Q12948 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.42■□□□□ 0.7
FOXC1Q12948 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
FOXC1Q12948 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXC1Q12948 LTK-203ENST00000453182 2412 ntTSL 2 BASIC19.42■□□□□ 0.7
FOXC1Q12948 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
FOXC1Q12948 AC027702.1-201ENST00000563810 1770 ntBASIC19.42■□□□□ 0.7
FOXC1Q12948 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms