Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SLC25A24-204ENST00000569674 2357 ntBASIC20.26■□□□□ 0.83
LIMK1P53667 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMK1P53667 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMK1P53667 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMK1P53667 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
LIMK1P53667 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.25■□□□□ 0.83
LIMK1P53667 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LIMK1P53667 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.25■□□□□ 0.83
LIMK1P53667 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMK1P53667 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.24■□□□□ 0.83
LIMK1P53667 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMK1P53667 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMK1P53667 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.24■□□□□ 0.83
LIMK1P53667 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.24■□□□□ 0.83
LIMK1P53667 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMK1P53667 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LIMK1P53667 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LIMK1P53667 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
LIMK1P53667 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMK1P53667 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMK1P53667 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
LIMK1P53667 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMK1P53667 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.23■□□□□ 0.83
LIMK1P53667 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.23■□□□□ 0.83
LIMK1P53667 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMK1P53667 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LIMK1P53667 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LIMK1P53667 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.22■□□□□ 0.83
LIMK1P53667 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 MMP23A-201ENST00000234610 1017 ntBASIC20.22■□□□□ 0.83
LIMK1P53667 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.22■□□□□ 0.83
LIMK1P53667 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.22■□□□□ 0.83
LIMK1P53667 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.22■□□□□ 0.83
LIMK1P53667 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.22■□□□□ 0.83
LIMK1P53667 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.22■□□□□ 0.83
LIMK1P53667 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.22■□□□□ 0.83
LIMK1P53667 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LIMK1P53667 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LIMK1P53667 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
LIMK1P53667 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
LIMK1P53667 KRASP1-201ENST00000407852 552 ntBASIC20.21■□□□□ 0.83
LIMK1P53667 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.21■□□□□ 0.83
LIMK1P53667 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
LIMK1P53667 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.21■□□□□ 0.83
LIMK1P53667 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC20.21■□□□□ 0.83
LIMK1P53667 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC20.21■□□□□ 0.83
LIMK1P53667 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.21■□□□□ 0.83
LIMK1P53667 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LIMK1P53667 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.21■□□□□ 0.83
LIMK1P53667 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LIMK1P53667 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
LIMK1P53667 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMK1P53667 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.2■□□□□ 0.82
LIMK1P53667 AC120498.8-201ENST00000614275 531 ntBASIC20.2■□□□□ 0.82
LIMK1P53667 AC026471.5-201ENST00000615068 467 ntBASIC20.2■□□□□ 0.82
LIMK1P53667 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.2■□□□□ 0.82
LIMK1P53667 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMK1P53667 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.2■□□□□ 0.82
LIMK1P53667 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LIMK1P53667 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms