Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 SDL1YIL167W 633 nt1.26□□□□□ -2.21
CUP9P41817 HYR1YIR037W 492 nt1.26□□□□□ -2.21
CUP9P41817 RAM2YKL019W 951 nt1.26□□□□□ -2.21
CUP9P41817 YOL150CYOL150C 312 nt1.26□□□□□ -2.21
CUP9P41817 TFB6YOR352W 1032 nt1.26□□□□□ -2.21
CUP9P41817 TAZ1YPR140W 1146 nt1.26□□□□□ -2.21
CUP9P41817 GRR1YJR090C 3456 nt1.25□□□□□ -2.21
CUP9P41817 NCL1YBL024W 2055 nt1.25□□□□□ -2.21
CUP9P41817 SPT14YPL175W 1359 nt1.25□□□□□ -2.21
CUP9P41817 SRB7YDR308C 423 nt1.25□□□□□ -2.21
CUP9P41817 OST5YGL226C-A 261 nt1.25□□□□□ -2.21
CUP9P41817 YGR242WYGR242W 309 nt1.25□□□□□ -2.21
CUP9P41817 tQ(UUG)E2tQ(UUG)E2 72 nt1.25□□□□□ -2.21
CUP9P41817 RPS30AYLR287C-A 192 nt1.25□□□□□ -2.21
CUP9P41817 MSH6YDR097C 3729 nt1.25□□□□□ -2.21
CUP9P41817 PIK1YNL267W 3201 nt1.25□□□□□ -2.21
CUP9P41817 PHR1YOR386W 1698 nt1.24□□□□□ -2.21
CUP9P41817 YDL025W-AYDL025W-A 105 nt1.24□□□□□ -2.21
CUP9P41817 SMD1YGR074W 441 nt1.24□□□□□ -2.21
CUP9P41817 RPL40AYIL148W 387 nt1.24□□□□□ -2.21
CUP9P41817 YJL133C-AYJL133C-A 225 nt1.24□□□□□ -2.21
CUP9P41817 GPX1YKL026C 504 nt1.24□□□□□ -2.21
CUP9P41817 YMR052C-AYMR052C-A 366 nt1.24□□□□□ -2.21
CUP9P41817 SEN15YMR059W 387 nt1.24□□□□□ -2.21
CUP9P41817 ERG29YMR134W 714 nt1.24□□□□□ -2.21
CUP9P41817 YMR230W-AYMR230W-A 189 nt1.24□□□□□ -2.21
CUP9P41817 STB4YMR019W 2850 nt1.23□□□□□ -2.21
CUP9P41817 RPI1YIL119C 1224 nt1.23□□□□□ -2.21
CUP9P41817 YJR023CYJR023C 402 nt1.23□□□□□ -2.21
CUP9P41817 HHT2YNL031C 411 nt1.23□□□□□ -2.21
CUP9P41817 RPB11YOL005C 363 nt1.23□□□□□ -2.21
CUP9P41817 PLC1YPL268W 2610 nt1.23□□□□□ -2.21
CUP9P41817 CDC25YLR310C 4770 nt1.23□□□□□ -2.21
CUP9P41817 KCS1YDR017C 3153 nt1.22□□□□□ -2.21
CUP9P41817 SXM1YDR395W 2835 nt1.22□□□□□ -2.21
CUP9P41817 PIP2YOR363C 2991 nt1.22□□□□□ -2.21
CUP9P41817 THG1YGR024C 714 nt1.22□□□□□ -2.21
CUP9P41817 YLR458WYLR458W 381 nt1.22□□□□□ -2.21
CUP9P41817 YML003WYML003W 873 nt1.22□□□□□ -2.21
CUP9P41817 RPS16AYMR143W 432 nt1.22□□□□□ -2.21
CUP9P41817 YOR169CYOR169C 465 nt1.22□□□□□ -2.21
CUP9P41817 SPC98YNL126W 2541 nt1.22□□□□□ -2.21
CUP9P41817 FYV8YGR196C 2454 nt1.22□□□□□ -2.21
CUP9P41817 ADR1YDR216W 3972 nt1.22□□□□□ -2.21
CUP9P41817 HKR1YDR420W 5409 nt1.22□□□□□ -2.21
CUP9P41817 PET127YOR017W 2403 nt1.21□□□□□ -2.22
CUP9P41817 VMR1YHL035C 4779 nt1.21□□□□□ -2.22
CUP9P41817 YLR419WYLR419W 4308 nt1.21□□□□□ -2.22
CUP9P41817 YDR042CYDR042C 603 nt1.21□□□□□ -2.22
CUP9P41817 RMD6YEL072W 696 nt1.21□□□□□ -2.22
CUP9P41817 NTF2YER009W 378 nt1.21□□□□□ -2.22
CUP9P41817 FAR7YFR008W 666 nt1.21□□□□□ -2.22
CUP9P41817 RTT102YGR275W 474 nt1.21□□□□□ -2.22
CUP9P41817 TRX1YLR043C 312 nt1.21□□□□□ -2.22
CUP9P41817 PKR1YMR123W 369 nt1.21□□□□□ -2.22
CUP9P41817 SFG1YOR315W 1041 nt1.21□□□□□ -2.22
CUP9P41817 YOR394C-AYOR394C-A 168 nt1.21□□□□□ -2.22
CUP9P41817 SPO24YPR036W-A 204 nt1.21□□□□□ -2.22
CUP9P41817 HIR3YJR140C 4947 nt1.21□□□□□ -2.22
CUP9P41817 RPH1YER169W 2391 nt1.2□□□□□ -2.22
CUP9P41817 TSA2YDR453C 591 nt1.2□□□□□ -2.22
CUP9P41817 YER121WYER121W 345 nt1.2□□□□□ -2.22
CUP9P41817 STF2YGR008C 255 nt1.2□□□□□ -2.22
CUP9P41817 HUG1YML058W-A 207 nt1.2□□□□□ -2.22
CUP9P41817 ATP18YML081C-A 180 nt1.2□□□□□ -2.22
CUP9P41817 TAP42YMR028W 1101 nt1.2□□□□□ -2.22
CUP9P41817 RIO2YNL207W 1278 nt1.2□□□□□ -2.22
CUP9P41817 MGR1YCL044C 1254 nt1.2□□□□□ -2.22
CUP9P41817 CRM1YGR218W 3255 nt1.2□□□□□ -2.22
CUP9P41817 NDD1YOR372C 1665 nt1.2□□□□□ -2.22
CUP9P41817 LAA1YJL207C 6045 nt1.19□□□□□ -2.22
CUP9P41817 IML1YJR138W 4755 nt1.19□□□□□ -2.22
CUP9P41817 YCR016WYCR016W 873 nt1.19□□□□□ -2.22
CUP9P41817 BUD26YDR241W 288 nt1.19□□□□□ -2.22
CUP9P41817 YIP1YGR172C 747 nt1.19□□□□□ -2.22
CUP9P41817 YJL127C-BYJL127C-B 159 nt1.19□□□□□ -2.22
CUP9P41817 BUD19YJL188C 309 nt1.19□□□□□ -2.22
CUP9P41817 HSK3YKL138C-A 210 nt1.19□□□□□ -2.22
CUP9P41817 PAI3YMR174C 207 nt1.19□□□□□ -2.22
CUP9P41817 CYB5YNL111C 363 nt1.19□□□□□ -2.22
CUP9P41817 YNL179CYNL179C 438 nt1.19□□□□□ -2.22
CUP9P41817 SEC63YOR254C 1992 nt1.19□□□□□ -2.22
CUP9P41817 CUP1-1YHR053C 186 nt1.18□□□□□ -2.22
CUP9P41817 CUP1-2YHR055C 186 nt1.18□□□□□ -2.22
CUP9P41817 GRX8YLR364W 330 nt1.18□□□□□ -2.22
CUP9P41817 MGE1YOR232W 687 nt1.18□□□□□ -2.22
CUP9P41817 YPL034WYPL034W 498 nt1.18□□□□□ -2.22
CUP9P41817 SPC29YPL124W 762 nt1.18□□□□□ -2.22
CUP9P41817 HTB1YDR224C 396 nt1.17□□□□□ -2.22
CUP9P41817 YAL064WYAL064W 285 nt1.17□□□□□ -2.22
CUP9P41817 GIM5YML094W 492 nt1.17□□□□□ -2.22
CUP9P41817 tV(UAC)BtV(UAC)B 74 nt1.16□□□□□ -2.22
CUP9P41817 tV(UAC)DtV(UAC)D 74 nt1.16□□□□□ -2.22
CUP9P41817 SUS1YBR111W-A 291 nt1.16□□□□□ -2.22
CUP9P41817 SEC21YNL287W 2808 nt1.15□□□□□ -2.23
CUP9P41817 YDR169C-AYDR169C-A 150 nt1.15□□□□□ -2.23
CUP9P41817 IST3YIR005W 447 nt1.15□□□□□ -2.23
CUP9P41817 YJL086CYJL086C 369 nt1.15□□□□□ -2.23
CUP9P41817 YET1YKL065C 621 nt1.15□□□□□ -2.23
CUP9P41817 VPS63YLR261C 327 nt1.15□□□□□ -2.23
Retrieved 100 of 7,029 protein–RNA pairs in 22.1 ms