Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC17.27■□□□□ 0.36
USF1P22415 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC17.27■□□□□ 0.36
USF1P22415 KRT18P68-201ENST00000392293 1000 ntBASIC17.27■□□□□ 0.36
USF1P22415 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
USF1P22415 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.27■□□□□ 0.36
USF1P22415 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
USF1P22415 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USF1P22415 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
USF1P22415 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
USF1P22415 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USF1P22415 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
USF1P22415 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
USF1P22415 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USF1P22415 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USF1P22415 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF1P22415 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
USF1P22415 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.26■□□□□ 0.35
USF1P22415 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.26■□□□□ 0.35
USF1P22415 AC007322.3-201ENST00000426526 701 ntBASIC17.26■□□□□ 0.35
USF1P22415 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.26■□□□□ 0.35
USF1P22415 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC17.26■□□□□ 0.35
USF1P22415 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.26■□□□□ 0.35
USF1P22415 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
USF1P22415 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.26■□□□□ 0.35
USF1P22415 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
USF1P22415 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF1P22415 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USF1P22415 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF1P22415 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
USF1P22415 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
USF1P22415 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
USF1P22415 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
USF1P22415 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USF1P22415 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
USF1P22415 UBE2SP1-201ENST00000450587 669 ntBASIC17.25■□□□□ 0.35
USF1P22415 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
USF1P22415 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.25■□□□□ 0.35
USF1P22415 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
USF1P22415 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
USF1P22415 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
USF1P22415 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC17.24■□□□□ 0.35
USF1P22415 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.24■□□□□ 0.35
USF1P22415 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC17.24■□□□□ 0.35
USF1P22415 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.24■□□□□ 0.35
USF1P22415 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
USF1P22415 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.24■□□□□ 0.35
USF1P22415 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
USF1P22415 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
USF1P22415 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC17.24■□□□□ 0.35
USF1P22415 AC092368.3-202ENST00000574180 1591 ntBASIC17.23■□□□□ 0.35
USF1P22415 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.23■□□□□ 0.35
USF1P22415 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.23■□□□□ 0.35
USF1P22415 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.23■□□□□ 0.35
USF1P22415 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 KRT17P3-201ENST00000420566 1262 ntBASIC17.23■□□□□ 0.35
USF1P22415 AL596275.1-201ENST00000423464 877 ntBASIC17.23■□□□□ 0.35
USF1P22415 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
USF1P22415 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.23■□□□□ 0.35
USF1P22415 PNMA6B-201ENST00000538162 1200 ntBASIC17.23■□□□□ 0.35
USF1P22415 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC17.23■□□□□ 0.35
USF1P22415 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms