Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC21.15■□□□□ 0.98
COL9A1P20849 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 CLEC4GP1-201ENST00000596555 870 ntBASIC21.15■□□□□ 0.98
COL9A1P20849 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.15■□□□□ 0.98
COL9A1P20849 AP000550.4-202ENST00000639755 178 ntBASIC21.15■□□□□ 0.98
COL9A1P20849 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 C9orf163-202ENST00000624034 2573 ntBASIC21.15■□□□□ 0.98
COL9A1P20849 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
COL9A1P20849 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
COL9A1P20849 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.14■□□□□ 0.98
COL9A1P20849 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL9A1P20849 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.14■□□□□ 0.98
COL9A1P20849 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
COL9A1P20849 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
COL9A1P20849 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL9A1P20849 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.14■□□□□ 0.97
COL9A1P20849 RBM17P1-201ENST00000453646 1190 ntBASIC21.14■□□□□ 0.97
COL9A1P20849 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL9A1P20849 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
COL9A1P20849 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
COL9A1P20849 LINC01238-205ENST00000567549 1107 ntBASIC21.14■□□□□ 0.97
COL9A1P20849 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC21.14■□□□□ 0.97
COL9A1P20849 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
COL9A1P20849 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL9A1P20849 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
COL9A1P20849 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
COL9A1P20849 AC010542.4-201ENST00000563151 1910 ntBASIC21.14■□□□□ 0.97
COL9A1P20849 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.13■□□□□ 0.97
COL9A1P20849 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL9A1P20849 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL9A1P20849 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
COL9A1P20849 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.13■□□□□ 0.97
COL9A1P20849 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL9A1P20849 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 MIR1238-201ENST00000408483 83 ntBASIC21.13■□□□□ 0.97
COL9A1P20849 AC091799.1-201ENST00000422823 811 ntBASIC21.13■□□□□ 0.97
COL9A1P20849 BX664615.1-201ENST00000443558 458 ntBASIC21.13■□□□□ 0.97
COL9A1P20849 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.13■□□□□ 0.97
COL9A1P20849 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.13■□□□□ 0.97
COL9A1P20849 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL9A1P20849 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL9A1P20849 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL9A1P20849 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL9A1P20849 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.13■□□□□ 0.97
COL9A1P20849 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
COL9A1P20849 AC079598.2-202ENST00000546624 1451 ntBASIC21.13■□□□□ 0.97
COL9A1P20849 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.12■□□□□ 0.97
COL9A1P20849 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL9A1P20849 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
COL9A1P20849 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
COL9A1P20849 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL9A1P20849 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL9A1P20849 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC21.12■□□□□ 0.97
COL9A1P20849 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.12■□□□□ 0.97
COL9A1P20849 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL9A1P20849 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL9A1P20849 AP000525.1-201ENST00000608286 694 ntBASIC21.12■□□□□ 0.97
COL9A1P20849 AL589743.5-201ENST00000616611 1050 ntBASIC21.12■□□□□ 0.97
COL9A1P20849 AC093458.2-201ENST00000623150 629 ntBASIC21.12■□□□□ 0.97
COL9A1P20849 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
COL9A1P20849 AC127496.7-201ENST00000625110 1798 ntBASIC21.12■□□□□ 0.97
COL9A1P20849 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL9A1P20849 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL9A1P20849 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
COL9A1P20849 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL9A1P20849 COPS8-203ENST00000409334 794 ntTSL 5 BASIC21.11■□□□□ 0.97
COL9A1P20849 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.11■□□□□ 0.97
COL9A1P20849 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.11■□□□□ 0.97
COL9A1P20849 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.11■□□□□ 0.97
COL9A1P20849 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
COL9A1P20849 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.11■□□□□ 0.97
COL9A1P20849 C11orf96-202ENST00000528572 1834 ntBASIC21.11■□□□□ 0.97
COL9A1P20849 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
COL9A1P20849 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
COL9A1P20849 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL9A1P20849 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC21.1■□□□□ 0.97
COL9A1P20849 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL9A1P20849 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.1■□□□□ 0.97
COL9A1P20849 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
COL9A1P20849 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC21.1■□□□□ 0.97
COL9A1P20849 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms