Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC19.82■□□□□ 0.76
PCNAP12004 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 FP700111.2-201ENST00000619190 1892 ntBASIC19.82■□□□□ 0.76
PCNAP12004 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
PCNAP12004 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
PCNAP12004 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
PCNAP12004 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.82■□□□□ 0.76
PCNAP12004 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.82■□□□□ 0.76
PCNAP12004 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.82■□□□□ 0.76
PCNAP12004 AC137761.2-201ENST00000561729 223 ntBASIC19.82■□□□□ 0.76
PCNAP12004 AC145350.3-201ENST00000569033 163 ntBASIC19.82■□□□□ 0.76
PCNAP12004 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.82■□□□□ 0.76
PCNAP12004 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 PCDHAC2-203ENST00000615316 3011 ntBASIC19.82■□□□□ 0.76
PCNAP12004 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.82■□□□□ 0.76
PCNAP12004 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.82■□□□□ 0.76
PCNAP12004 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
PCNAP12004 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC19.81■□□□□ 0.76
PCNAP12004 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.81■□□□□ 0.76
PCNAP12004 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
PCNAP12004 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.81■□□□□ 0.76
PCNAP12004 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC19.81■□□□□ 0.76
PCNAP12004 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.81■□□□□ 0.76
PCNAP12004 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 SLC7A5P1-201ENST00000568957 537 ntBASIC19.81■□□□□ 0.76
PCNAP12004 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.81■□□□□ 0.76
PCNAP12004 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
PCNAP12004 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 RBM17P2-201ENST00000616397 1405 ntBASIC19.81■□□□□ 0.76
PCNAP12004 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.81■□□□□ 0.76
PCNAP12004 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 AC007225.1-201ENST00000566331 1836 ntBASIC19.81■□□□□ 0.76
PCNAP12004 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
PCNAP12004 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.81■□□□□ 0.76
PCNAP12004 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.81■□□□□ 0.76
PCNAP12004 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PCNAP12004 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
PCNAP12004 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 AL391422.3-201ENST00000603791 2761 ntBASIC19.8■□□□□ 0.76
PCNAP12004 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
PCNAP12004 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.8■□□□□ 0.76
PCNAP12004 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PCNAP12004 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.8■□□□□ 0.76
PCNAP12004 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.8■□□□□ 0.76
PCNAP12004 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.8■□□□□ 0.76
PCNAP12004 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
PCNAP12004 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
PCNAP12004 AC116050.2-201ENST00000612102 1779 ntBASIC19.8■□□□□ 0.76
PCNAP12004 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
PCNAP12004 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.8■□□□□ 0.76
PCNAP12004 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCNAP12004 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCNAP12004 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
PCNAP12004 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.79■□□□□ 0.76
PCNAP12004 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
PCNAP12004 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.79■□□□□ 0.76
PCNAP12004 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.79■□□□□ 0.76
PCNAP12004 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.79■□□□□ 0.76
PCNAP12004 MIR5787-201ENST00000611784 55 ntBASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms