Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CLDN9O95484 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CLDN9O95484 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.75■□□□□ 0.75
CLDN9O95484 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CLDN9O95484 CDV3P1-201ENST00000471403 739 ntBASIC19.75■□□□□ 0.75
CLDN9O95484 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.75■□□□□ 0.75
CLDN9O95484 AC087623.3-201ENST00000607047 1098 ntBASIC19.75■□□□□ 0.75
CLDN9O95484 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.75■□□□□ 0.75
CLDN9O95484 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.75■□□□□ 0.75
CLDN9O95484 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CLDN9O95484 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLDN9O95484 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN9O95484 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.74■□□□□ 0.75
CLDN9O95484 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN9O95484 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLDN9O95484 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN9O95484 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN9O95484 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.74■□□□□ 0.75
CLDN9O95484 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.74■□□□□ 0.75
CLDN9O95484 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLDN9O95484 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLDN9O95484 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLDN9O95484 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN9O95484 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN9O95484 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN9O95484 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN9O95484 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.73■□□□□ 0.75
CLDN9O95484 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN9O95484 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN9O95484 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN9O95484 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN9O95484 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC19.73■□□□□ 0.75
CLDN9O95484 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CLDN9O95484 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLDN9O95484 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.73■□□□□ 0.75
CLDN9O95484 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CLDN9O95484 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CLDN9O95484 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.72■□□□□ 0.75
CLDN9O95484 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.72■□□□□ 0.75
CLDN9O95484 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.72■□□□□ 0.75
CLDN9O95484 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.72■□□□□ 0.75
CLDN9O95484 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.72■□□□□ 0.75
CLDN9O95484 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CLDN9O95484 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.71■□□□□ 0.75
CLDN9O95484 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CLDN9O95484 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CLDN9O95484 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.71■□□□□ 0.75
CLDN9O95484 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.71■□□□□ 0.75
CLDN9O95484 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 TERF1P5-201ENST00000477545 1207 ntBASIC19.71■□□□□ 0.75
CLDN9O95484 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.71■□□□□ 0.75
CLDN9O95484 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.71■□□□□ 0.75
CLDN9O95484 FAM21FP-204ENST00000608637 956 ntBASIC19.71■□□□□ 0.75
CLDN9O95484 AC010536.3-201ENST00000620306 533 ntBASIC19.71■□□□□ 0.75
CLDN9O95484 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.71■□□□□ 0.75
CLDN9O95484 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC19.71■□□□□ 0.75
CLDN9O95484 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC19.71■□□□□ 0.75
CLDN9O95484 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CLDN9O95484 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.71■□□□□ 0.75
CLDN9O95484 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.71■□□□□ 0.75
CLDN9O95484 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.7■□□□□ 0.74
CLDN9O95484 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CLDN9O95484 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.7■□□□□ 0.74
CLDN9O95484 KRT18P11-201ENST00000435214 1283 ntBASIC19.7■□□□□ 0.74
CLDN9O95484 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.7■□□□□ 0.74
CLDN9O95484 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
CLDN9O95484 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms