Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTDNEP1O95476 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTDNEP1O95476 AC099778.1-201ENST00000568593 1911 ntBASIC23.74■■□□□ 1.39
CTDNEP1O95476 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
CTDNEP1O95476 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
CTDNEP1O95476 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTDNEP1O95476 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTDNEP1O95476 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTDNEP1O95476 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CTDNEP1O95476 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTDNEP1O95476 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CTDNEP1O95476 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
CTDNEP1O95476 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC23.72■■□□□ 1.39
CTDNEP1O95476 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 AL162412.1-201ENST00000567129 965 ntBASIC23.72■■□□□ 1.39
CTDNEP1O95476 IKBKGP1-201ENST00000612193 1073 ntBASIC23.72■■□□□ 1.39
CTDNEP1O95476 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CTDNEP1O95476 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CTDNEP1O95476 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CTDNEP1O95476 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC23.72■■□□□ 1.39
CTDNEP1O95476 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
CTDNEP1O95476 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.71■■□□□ 1.39
CTDNEP1O95476 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC23.71■■□□□ 1.39
CTDNEP1O95476 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.71■■□□□ 1.39
CTDNEP1O95476 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 MIR935-201ENST00000401179 91 ntBASIC23.71■■□□□ 1.39
CTDNEP1O95476 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
CTDNEP1O95476 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 SMG8-203ENST00000578922 2178 ntBASIC23.71■■□□□ 1.39
CTDNEP1O95476 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC23.71■■□□□ 1.39
CTDNEP1O95476 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
CTDNEP1O95476 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
CTDNEP1O95476 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC23.7■■□□□ 1.39
CTDNEP1O95476 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.39
CTDNEP1O95476 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
CTDNEP1O95476 CYP21A1P-202ENST00000354927 1481 ntBASIC23.7■■□□□ 1.38
CTDNEP1O95476 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
CTDNEP1O95476 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
CTDNEP1O95476 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
CTDNEP1O95476 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC23.7■■□□□ 1.38
CTDNEP1O95476 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 PCDHAC2-203ENST00000615316 3011 ntBASIC23.69■■□□□ 1.38
CTDNEP1O95476 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
CTDNEP1O95476 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.69■■□□□ 1.38
CTDNEP1O95476 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
CTDNEP1O95476 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC23.68■■□□□ 1.38
CTDNEP1O95476 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CTDNEP1O95476 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
CTDNEP1O95476 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
CTDNEP1O95476 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
CTDNEP1O95476 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC23.68■■□□□ 1.38
CTDNEP1O95476 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms