Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 KRT18P11-201ENST00000435214 1283 ntBASIC19.98■□□□□ 0.79
VPS4BO75351 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.98■□□□□ 0.79
VPS4BO75351 EEF1DP3-203ENST00000566025 782 ntBASIC19.98■□□□□ 0.79
VPS4BO75351 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS4BO75351 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS4BO75351 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS4BO75351 FP700111.2-201ENST00000619190 1892 ntBASIC19.98■□□□□ 0.79
VPS4BO75351 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.98■□□□□ 0.79
VPS4BO75351 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
VPS4BO75351 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VPS4BO75351 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VPS4BO75351 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS4BO75351 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
VPS4BO75351 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS4BO75351 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 MIR663A-201ENST00000385250 93 ntBASIC19.97■□□□□ 0.79
VPS4BO75351 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.97■□□□□ 0.79
VPS4BO75351 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.97■□□□□ 0.79
VPS4BO75351 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS4BO75351 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS4BO75351 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VPS4BO75351 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
VPS4BO75351 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
VPS4BO75351 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.97■□□□□ 0.79
VPS4BO75351 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
VPS4BO75351 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
VPS4BO75351 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
VPS4BO75351 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 AC004854.2-201ENST00000608450 1441 ntBASIC19.96■□□□□ 0.79
VPS4BO75351 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
VPS4BO75351 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS4BO75351 TSPY20P-201ENST00000450910 630 ntBASIC19.96■□□□□ 0.79
VPS4BO75351 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.96■□□□□ 0.79
VPS4BO75351 AC011767.1-201ENST00000617410 1153 ntBASIC19.96■□□□□ 0.79
VPS4BO75351 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
VPS4BO75351 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.96■□□□□ 0.79
VPS4BO75351 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.95■□□□□ 0.78
VPS4BO75351 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS4BO75351 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.95■□□□□ 0.78
VPS4BO75351 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS4BO75351 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.95■□□□□ 0.78
VPS4BO75351 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
VPS4BO75351 AL162377.1-201ENST00000618844 1793 ntBASIC19.95■□□□□ 0.78
VPS4BO75351 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
VPS4BO75351 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
VPS4BO75351 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
VPS4BO75351 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS4BO75351 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
VPS4BO75351 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
VPS4BO75351 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.94■□□□□ 0.78
VPS4BO75351 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
VPS4BO75351 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
VPS4BO75351 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4BO75351 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS4BO75351 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4BO75351 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4BO75351 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.93■□□□□ 0.78
VPS4BO75351 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
VPS4BO75351 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.93■□□□□ 0.78
VPS4BO75351 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.93■□□□□ 0.78
VPS4BO75351 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4BO75351 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
VPS4BO75351 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.93■□□□□ 0.78
VPS4BO75351 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.93■□□□□ 0.78
VPS4BO75351 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.92■□□□□ 0.78
VPS4BO75351 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
VPS4BO75351 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms