Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
RNF40O75150 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.91■■□□□ 1.1
RNF40O75150 ME2-218ENST00000640965 2476 ntTSL 5 BASIC21.91■■□□□ 1.1
RNF40O75150 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
RNF40O75150 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.91■■□□□ 1.1
RNF40O75150 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.91■■□□□ 1.1
RNF40O75150 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 METTL15-202ENST00000403099 795 ntTSL 5 BASIC21.91■■□□□ 1.1
RNF40O75150 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.91■■□□□ 1.1
RNF40O75150 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
RNF40O75150 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC21.91■■□□□ 1.1
RNF40O75150 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.91■■□□□ 1.1
RNF40O75150 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.91■■□□□ 1.1
RNF40O75150 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
RNF40O75150 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
RNF40O75150 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.9■■□□□ 1.1
RNF40O75150 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 AC055733.4-201ENST00000638462 1354 ntBASIC21.9■■□□□ 1.1
RNF40O75150 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.9■■□□□ 1.1
RNF40O75150 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.9■■□□□ 1.1
RNF40O75150 OAS3-207ENST00000551007 998 ntTSL 2 BASIC21.9■■□□□ 1.1
RNF40O75150 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.9■■□□□ 1.1
RNF40O75150 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.9■■□□□ 1.1
RNF40O75150 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 AP005212.1-201ENST00000581547 1997 ntBASIC21.9■■□□□ 1.1
RNF40O75150 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
RNF40O75150 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
RNF40O75150 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.89■■□□□ 1.1
RNF40O75150 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.1
RNF40O75150 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RNF40O75150 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.89■■□□□ 1.09
RNF40O75150 TSPY20P-201ENST00000450910 630 ntBASIC21.89■■□□□ 1.09
RNF40O75150 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.89■■□□□ 1.09
RNF40O75150 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.89■■□□□ 1.09
RNF40O75150 AL138781.1-201ENST00000566567 1274 ntBASIC21.89■■□□□ 1.09
RNF40O75150 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.89■■□□□ 1.09
RNF40O75150 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RNF40O75150 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.89■■□□□ 1.09
RNF40O75150 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RNF40O75150 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.89■■□□□ 1.09
RNF40O75150 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
RNF40O75150 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
RNF40O75150 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
RNF40O75150 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.88■■□□□ 1.09
RNF40O75150 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 SLC29A4P1-201ENST00000398760 971 ntBASIC21.88■■□□□ 1.09
RNF40O75150 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC21.88■■□□□ 1.09
RNF40O75150 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.88■■□□□ 1.09
RNF40O75150 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.88■■□□□ 1.09
RNF40O75150 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 KRT18P6-201ENST00000555540 1265 ntBASIC21.88■■□□□ 1.09
RNF40O75150 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC21.88■■□□□ 1.09
RNF40O75150 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.88■■□□□ 1.09
RNF40O75150 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.88■■□□□ 1.09
RNF40O75150 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
RNF40O75150 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.88■■□□□ 1.09
RNF40O75150 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
RNF40O75150 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.88■■□□□ 1.09
RNF40O75150 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC21.87■■□□□ 1.09
RNF40O75150 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.87■■□□□ 1.09
RNF40O75150 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.87■■□□□ 1.09
RNF40O75150 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.87■■□□□ 1.09
RNF40O75150 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.87■■□□□ 1.09
RNF40O75150 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
RNF40O75150 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.87■■□□□ 1.09
RNF40O75150 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
RNF40O75150 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms