Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 AC093827.2-201ENST00000512654 315 ntBASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
TRAV40A0A0B4J280 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 RPS2P52-201ENST00000469610 820 ntBASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
TRAV40A0A0B4J280 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 AL158047.1-201ENST00000445918 881 ntBASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 OR2A1-AS1-207ENST00000486094 819 ntBASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 AC073648.6-201ENST00000641589 218 ntBASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
TRAV40A0A0B4J280 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 REXO2-208ENST00000539754 791 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 SOX15-203ENST00000570788 1093 ntBASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 MMD2-204ENST00000612910 778 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AL356652.1-201ENST00000615962 565 ntBASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
TRAV40A0A0B4J280 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 STK25-234ENST00000535007 2459 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
TRAV40A0A0B4J280 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms